miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
247 3' -57.6 AC_000008.1 + 24602 0.66 0.425439
Target:  5'- gAGCGGaCAAGcAGCu--GGCcuuGCGGCAg -3'
miRNA:   3'- gUCGCC-GUUC-UCGuucUCGu--CGCCGU- -5'
247 3' -57.6 AC_000008.1 + 12290 0.66 0.425439
Target:  5'- aGGaGGUAAGcGCAcAGuGCGGCGGCu -3'
miRNA:   3'- gUCgCCGUUCuCGU-UCuCGUCGCCGu -5'
247 3' -57.6 AC_000008.1 + 8611 0.66 0.425439
Target:  5'- gGGgGGCuccggacccgccGGGAGaGGGGGCAGgGGCAc -3'
miRNA:   3'- gUCgCCG------------UUCUCgUUCUCGUCgCCGU- -5'
247 3' -57.6 AC_000008.1 + 14192 0.66 0.425439
Target:  5'- -uGUGGUGAGcgcGGCGccAGuGGCGGCGGCGc -3'
miRNA:   3'- guCGCCGUUC---UCGU--UC-UCGUCGCCGU- -5'
247 3' -57.6 AC_000008.1 + 11792 0.66 0.41562
Target:  5'- uGGCGGCAucGGuGgAGGcGGUGGUGGCGa -3'
miRNA:   3'- gUCGCCGU--UCuCgUUC-UCGUCGCCGU- -5'
247 3' -57.6 AC_000008.1 + 17274 0.66 0.41562
Target:  5'- uGGCGGCGcGGcGCAGGGacGC-GCGGCu -3'
miRNA:   3'- gUCGCCGUuCU-CGUUCU--CGuCGCCGu -5'
247 3' -57.6 AC_000008.1 + 4607 0.66 0.396405
Target:  5'- --aUGGCAAuGGGCccacGGGCGGCGGCc -3'
miRNA:   3'- gucGCCGUU-CUCGuu--CUCGUCGCCGu -5'
247 3' -57.6 AC_000008.1 + 18058 0.67 0.368679
Target:  5'- --uCGGCAccAGCAAuauGAGCGGUGGCGc -3'
miRNA:   3'- gucGCCGUucUCGUU---CUCGUCGCCGU- -5'
247 3' -57.6 AC_000008.1 + 11367 0.67 0.363296
Target:  5'- -uGCGGgAucgaaaguuccacgcAGGGCGcGAGCuGCGGCAu -3'
miRNA:   3'- guCGCCgU---------------UCUCGUuCUCGuCGCCGU- -5'
247 3' -57.6 AC_000008.1 + 9753 0.67 0.359737
Target:  5'- -cGCGGCugcugcugauAGGGCu---GCGGCGGCGg -3'
miRNA:   3'- guCGCCGu---------UCUCGuucuCGUCGCCGU- -5'
247 3' -57.6 AC_000008.1 + 13882 0.67 0.359737
Target:  5'- aCAGCGGUcGGGGgAAGAaGCAaUGGCGc -3'
miRNA:   3'- -GUCGCCGuUCUCgUUCU-CGUcGCCGU- -5'
247 3' -57.6 AC_000008.1 + 8662 0.67 0.342312
Target:  5'- -cGCgGGCAGGAGCugGuGCuGCGcGCGu -3'
miRNA:   3'- guCG-CCGUUCUCGuuCuCGuCGC-CGU- -5'
247 3' -57.6 AC_000008.1 + 30467 0.67 0.333831
Target:  5'- gCAGCGccuGCuagaAAGAcGCAGG-GCAGCGGCc -3'
miRNA:   3'- -GUCGC---CG----UUCU-CGUUCuCGUCGCCGu -5'
247 3' -57.6 AC_000008.1 + 32084 0.68 0.317333
Target:  5'- gCGGUGGCugcAGCGGcugaAGCGGCGGCGg -3'
miRNA:   3'- -GUCGCCGuucUCGUUc---UCGUCGCCGU- -5'
247 3' -57.6 AC_000008.1 + 1676 0.68 0.309317
Target:  5'- -uGCGGUgguGGAuGUuaucAGGGCAGCGGCGc -3'
miRNA:   3'- guCGCCGu--UCU-CGu---UCUCGUCGCCGU- -5'
247 3' -57.6 AC_000008.1 + 26791 0.69 0.264467
Target:  5'- gCGGCGGCAGcAGCAGGAGgAGgagcgcugcgucUGGCGc -3'
miRNA:   3'- -GUCGCCGUUcUCGUUCUCgUC------------GCCGU- -5'
247 3' -57.6 AC_000008.1 + 12074 0.69 0.250735
Target:  5'- gGGCccuGGCu--GGCAcGGGCAGCGGCGa -3'
miRNA:   3'- gUCG---CCGuucUCGUuCUCGUCGCCGU- -5'
247 3' -57.6 AC_000008.1 + 8492 0.69 0.246731
Target:  5'- aCAGUGGUggGAGCgggAcuuuccugguacaccAGGGCAGCGGg- -3'
miRNA:   3'- -GUCGCCGuuCUCG---U---------------UCUCGUCGCCgu -5'
247 3' -57.6 AC_000008.1 + 19691 0.7 0.213048
Target:  5'- gGGCGGCAGugccGGGUcGGcGGCGGUGGCGa -3'
miRNA:   3'- gUCGCCGUU----CUCGuUC-UCGUCGCCGU- -5'
247 3' -57.6 AC_000008.1 + 7501 0.71 0.190711
Target:  5'- aGGCGGUAGGuGU-GGuGCAGCGGCc -3'
miRNA:   3'- gUCGCCGUUCuCGuUCuCGUCGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.