miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24706 3' -54.9 NC_005264.1 + 69810 0.67 0.924689
Target:  5'- cACgCAUUCGGCGCGgAcGACGCcgccgGGGUGa -3'
miRNA:   3'- -UG-GUGAGCUGCGCgUaCUGUG-----CCUAC- -5'
24706 3' -54.9 NC_005264.1 + 77014 0.67 0.913366
Target:  5'- cCCACgugagUGACGCGCGUGuCGCuaacgcuaggaaGGGUGc -3'
miRNA:   3'- uGGUGa----GCUGCGCGUACuGUG------------CCUAC- -5'
24706 3' -54.9 NC_005264.1 + 83250 0.71 0.734413
Target:  5'- cGCCGCU-GAUGCGC-UGGCGCGGc-- -3'
miRNA:   3'- -UGGUGAgCUGCGCGuACUGUGCCuac -5'
24706 3' -54.9 NC_005264.1 + 84758 0.67 0.901095
Target:  5'- uGCCGCaaCGACGgGCA--GCGCGGAg- -3'
miRNA:   3'- -UGGUGa-GCUGCgCGUacUGUGCCUac -5'
24706 3' -54.9 NC_005264.1 + 84796 0.66 0.935054
Target:  5'- gUCAUUCGAgGCaggGCAUGgcGCACGGAg- -3'
miRNA:   3'- uGGUGAGCUgCG---CGUAC--UGUGCCUac -5'
24706 3' -54.9 NC_005264.1 + 90766 0.73 0.612985
Target:  5'- uGCCGC-CGugGCuguGCAUGACAgGGAUu -3'
miRNA:   3'- -UGGUGaGCugCG---CGUACUGUgCCUAc -5'
24706 3' -54.9 NC_005264.1 + 91525 0.66 0.951317
Target:  5'- cGCgCACUCGccaaguucaugcuCGCGCAUaucgGGCGCGGcgGg -3'
miRNA:   3'- -UG-GUGAGCu------------GCGCGUA----CUGUGCCuaC- -5'
24706 3' -54.9 NC_005264.1 + 94394 0.7 0.782122
Target:  5'- gGCC-CUCcGCGCGCAgaccgcGGCGCGGAc- -3'
miRNA:   3'- -UGGuGAGcUGCGCGUa-----CUGUGCCUac -5'
24706 3' -54.9 NC_005264.1 + 94593 0.68 0.866408
Target:  5'- gGCCGCccgCGGCGCggGCAUGGCuuGGcgGu -3'
miRNA:   3'- -UGGUGa--GCUGCG--CGUACUGugCCuaC- -5'
24706 3' -54.9 NC_005264.1 + 110914 0.69 0.843027
Target:  5'- cGCCaaGCUCGGCGCGgAcGAC-CGGAg- -3'
miRNA:   3'- -UGG--UGAGCUGCGCgUaCUGuGCCUac -5'
24706 3' -54.9 NC_005264.1 + 114300 0.68 0.887893
Target:  5'- gGCgACgggGGCGCGCGggacGACGCGGAa- -3'
miRNA:   3'- -UGgUGag-CUGCGCGUa---CUGUGCCUac -5'
24706 3' -54.9 NC_005264.1 + 117275 0.66 0.948817
Target:  5'- --gACUCGuGCGCGCc-GACACGGGc- -3'
miRNA:   3'- uggUGAGC-UGCGCGuaCUGUGCCUac -5'
24706 3' -54.9 NC_005264.1 + 118559 0.66 0.935054
Target:  5'- cCCGCUCGgugaucucauccGCGCgGCGUGACGCGccGAa- -3'
miRNA:   3'- uGGUGAGC------------UGCG-CGUACUGUGC--CUac -5'
24706 3' -54.9 NC_005264.1 + 127089 0.67 0.924689
Target:  5'- cCCACgucgCGGC-CGCAgucgGGCACGGGc- -3'
miRNA:   3'- uGGUGa---GCUGcGCGUa---CUGUGCCUac -5'
24706 3' -54.9 NC_005264.1 + 128034 1.07 0.005489
Target:  5'- uACCACUCGACGCGCAUGACACGGAUGc -3'
miRNA:   3'- -UGGUGAGCUGCGCGUACUGUGCCUAC- -5'
24706 3' -54.9 NC_005264.1 + 129335 0.66 0.939878
Target:  5'- uACCggGCgcagCGACGCGCAcUGagcaaGCGCGGAa- -3'
miRNA:   3'- -UGG--UGa---GCUGCGCGU-AC-----UGUGCCUac -5'
24706 3' -54.9 NC_005264.1 + 131590 0.66 0.954128
Target:  5'- cGCCuagguguggagggagCGGCGCGCGUGggcgcGCGCGGAg- -3'
miRNA:   3'- -UGGuga------------GCUGCGCGUAC-----UGUGCCUac -5'
24706 3' -54.9 NC_005264.1 + 134902 0.74 0.592568
Target:  5'- gACCAC-CGACGCGCA-GACACGc--- -3'
miRNA:   3'- -UGGUGaGCUGCGCGUaCUGUGCcuac -5'
24706 3' -54.9 NC_005264.1 + 136653 0.69 0.843027
Target:  5'- aGCC--UCGACGCGCGUGGaguaaaacaAUGGGUGc -3'
miRNA:   3'- -UGGugAGCUGCGCGUACUg--------UGCCUAC- -5'
24706 3' -54.9 NC_005264.1 + 140639 0.67 0.901095
Target:  5'- uCCACUUGcCGCGCAcGcCACaGAUGg -3'
miRNA:   3'- uGGUGAGCuGCGCGUaCuGUGcCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.