miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24706 3' -54.9 NC_005264.1 + 6736 0.66 0.944465
Target:  5'- -gUACUCcGCG-GCGUGGCGCGGGa- -3'
miRNA:   3'- ugGUGAGcUGCgCGUACUGUGCCUac -5'
24706 3' -54.9 NC_005264.1 + 8062 0.67 0.924689
Target:  5'- cCCACgucgCGGC-CGCAgucgGGCACGGGc- -3'
miRNA:   3'- uGGUGa---GCUGcGCGUa---CUGUGCCUac -5'
24706 3' -54.9 NC_005264.1 + 9007 1.07 0.005489
Target:  5'- uACCACUCGACGCGCAUGACACGGAUGc -3'
miRNA:   3'- -UGGUGAGCUGCGCGUACUGUGCCUAC- -5'
24706 3' -54.9 NC_005264.1 + 10308 0.66 0.939878
Target:  5'- uACCggGCgcagCGACGCGCAcUGagcaaGCGCGGAa- -3'
miRNA:   3'- -UGG--UGa---GCUGCGCGU-AC-----UGUGCCUac -5'
24706 3' -54.9 NC_005264.1 + 13955 0.67 0.919147
Target:  5'- uGCCACgcggCGACGaggagacgaGCGaGACGCGGGg- -3'
miRNA:   3'- -UGGUGa---GCUGCg--------CGUaCUGUGCCUac -5'
24706 3' -54.9 NC_005264.1 + 16426 0.72 0.674328
Target:  5'- gGCCGCUCGACuGcCGCggGGCcugcccGCGGGUGu -3'
miRNA:   3'- -UGGUGAGCUG-C-GCGuaCUG------UGCCUAC- -5'
24706 3' -54.9 NC_005264.1 + 16671 0.68 0.866408
Target:  5'- gGCCACgCGACGUGCAUgcgaggcaucGACACGa--- -3'
miRNA:   3'- -UGGUGaGCUGCGCGUA----------CUGUGCcuac -5'
24706 3' -54.9 NC_005264.1 + 17141 0.66 0.944465
Target:  5'- --gGCUUgGGCGCGCAUGGguCGGAc- -3'
miRNA:   3'- uggUGAG-CUGCGCGUACUguGCCUac -5'
24706 3' -54.9 NC_005264.1 + 19428 0.71 0.753828
Target:  5'- cGCCGggUGugGcCGCggGGCGCGGGUGg -3'
miRNA:   3'- -UGGUgaGCugC-GCGuaCUGUGCCUAC- -5'
24706 3' -54.9 NC_005264.1 + 20456 0.69 0.83484
Target:  5'- aGCCgGCggacagCGGCGCGCAUGggaggGCAUGGAa- -3'
miRNA:   3'- -UGG-UGa-----GCUGCGCGUAC-----UGUGCCUac -5'
24706 3' -54.9 NC_005264.1 + 36345 0.68 0.887893
Target:  5'- gGCCGCaCGACGUucuCcgGACGCGGAg- -3'
miRNA:   3'- -UGGUGaGCUGCGc--GuaCUGUGCCUac -5'
24706 3' -54.9 NC_005264.1 + 40367 0.66 0.944465
Target:  5'- gACC-CUCGugGCGCuuUGcgagcaGCGCGGGc- -3'
miRNA:   3'- -UGGuGAGCugCGCGu-AC------UGUGCCUac -5'
24706 3' -54.9 NC_005264.1 + 41583 0.7 0.809204
Target:  5'- aACCGCUCGACGUGgCGUcuaaACAUGGGc- -3'
miRNA:   3'- -UGGUGAGCUGCGC-GUAc---UGUGCCUac -5'
24706 3' -54.9 NC_005264.1 + 44261 0.68 0.894609
Target:  5'- uGCUGUUCGGCGCGUcacgccGCGCGGAUGa -3'
miRNA:   3'- -UGGUGAGCUGCGCGuac---UGUGCCUAC- -5'
24706 3' -54.9 NC_005264.1 + 52655 0.67 0.924689
Target:  5'- gGCCgaugACUCGGCGgGgAagGGCACGGAg- -3'
miRNA:   3'- -UGG----UGAGCUGCgCgUa-CUGUGCCUac -5'
24706 3' -54.9 NC_005264.1 + 57878 0.7 0.782122
Target:  5'- gGCgGCaCGGCgGC-CAUGGCGCGGAUGa -3'
miRNA:   3'- -UGgUGaGCUG-CGcGUACUGUGCCUAC- -5'
24706 3' -54.9 NC_005264.1 + 57892 0.68 0.887893
Target:  5'- gGCCacgagGCUCGGCGCu--UGGCACGGcUGg -3'
miRNA:   3'- -UGG-----UGAGCUGCGcguACUGUGCCuAC- -5'
24706 3' -54.9 NC_005264.1 + 58806 0.68 0.880951
Target:  5'- aACCGauuuccgCGGCGCGCGUcaaACACGGAa- -3'
miRNA:   3'- -UGGUga-----GCUGCGCGUAc--UGUGCCUac -5'
24706 3' -54.9 NC_005264.1 + 58890 0.68 0.880951
Target:  5'- cGCCACgCGuuCGCGCAUa--GCGGAUGc -3'
miRNA:   3'- -UGGUGaGCu-GCGCGUAcugUGCCUAC- -5'
24706 3' -54.9 NC_005264.1 + 62046 0.68 0.878112
Target:  5'- uACCAUcguaagagauuugCGGCGCGCAUGGCuuGGGc- -3'
miRNA:   3'- -UGGUGa------------GCUGCGCGUACUGugCCUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.