miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24706 3' -54.9 NC_005264.1 + 128034 1.07 0.005489
Target:  5'- uACCACUCGACGCGCAUGACACGGAUGc -3'
miRNA:   3'- -UGGUGAGCUGCGCGUACUGUGCCUAC- -5'
24706 3' -54.9 NC_005264.1 + 118559 0.66 0.935054
Target:  5'- cCCGCUCGgugaucucauccGCGCgGCGUGACGCGccGAa- -3'
miRNA:   3'- uGGUGAGC------------UGCG-CGUACUGUGC--CUac -5'
24706 3' -54.9 NC_005264.1 + 129335 0.66 0.939878
Target:  5'- uACCggGCgcagCGACGCGCAcUGagcaaGCGCGGAa- -3'
miRNA:   3'- -UGG--UGa---GCUGCGCGU-AC-----UGUGCCUac -5'
24706 3' -54.9 NC_005264.1 + 159394 0.66 0.944465
Target:  5'- gACC-CUCGugGCGCuuUGcgagcaGCGCGGGc- -3'
miRNA:   3'- -UGGuGAGCugCGCGu-AC------UGUGCCUac -5'
24706 3' -54.9 NC_005264.1 + 41583 0.7 0.809204
Target:  5'- aACCGCUCGACGUGgCGUcuaaACAUGGGc- -3'
miRNA:   3'- -UGGUGAGCUGCGC-GUAc---UGUGCCUac -5'
24706 3' -54.9 NC_005264.1 + 147568 0.69 0.826469
Target:  5'- gGCCGC-CGACGUGUgcGACGgGGAa- -3'
miRNA:   3'- -UGGUGaGCUGCGCGuaCUGUgCCUac -5'
24706 3' -54.9 NC_005264.1 + 58806 0.68 0.880951
Target:  5'- aACCGauuuccgCGGCGCGCGUcaaACACGGAa- -3'
miRNA:   3'- -UGGUga-----GCUGCGCGUAc--UGUGCCUac -5'
24706 3' -54.9 NC_005264.1 + 114300 0.68 0.887893
Target:  5'- gGCgACgggGGCGCGCGggacGACGCGGAa- -3'
miRNA:   3'- -UGgUGag-CUGCGCGUa---CUGUGCCUac -5'
24706 3' -54.9 NC_005264.1 + 84758 0.67 0.901095
Target:  5'- uGCCGCaaCGACGgGCA--GCGCGGAg- -3'
miRNA:   3'- -UGGUGa-GCUGCgCGUacUGUGCCUac -5'
24706 3' -54.9 NC_005264.1 + 13955 0.67 0.919147
Target:  5'- uGCCACgcggCGACGaggagacgaGCGaGACGCGGGg- -3'
miRNA:   3'- -UGGUGa---GCUGCg--------CGUaCUGUGCCUac -5'
24706 3' -54.9 NC_005264.1 + 155372 0.68 0.887893
Target:  5'- gGCCGCaCGACGUucuCcgGACGCGGAg- -3'
miRNA:   3'- -UGGUGaGCUGCGc--GuaCUGUGCCUac -5'
24706 3' -54.9 NC_005264.1 + 16426 0.72 0.674328
Target:  5'- gGCCGCUCGACuGcCGCggGGCcugcccGCGGGUGu -3'
miRNA:   3'- -UGGUGAGCUG-C-GCGuaCUG------UGCCUAC- -5'
24706 3' -54.9 NC_005264.1 + 69810 0.67 0.924689
Target:  5'- cACgCAUUCGGCGCGgAcGACGCcgccgGGGUGa -3'
miRNA:   3'- -UG-GUGAGCUGCGCgUaCUGUG-----CCUAC- -5'
24706 3' -54.9 NC_005264.1 + 19428 0.71 0.753828
Target:  5'- cGCCGggUGugGcCGCggGGCGCGGGUGg -3'
miRNA:   3'- -UGGUgaGCugC-GCGuaCUGUGCCUAC- -5'
24706 3' -54.9 NC_005264.1 + 57892 0.68 0.887893
Target:  5'- gGCCacgagGCUCGGCGCu--UGGCACGGcUGg -3'
miRNA:   3'- -UGG-----UGAGCUGCGcguACUGUGCCuAC- -5'
24706 3' -54.9 NC_005264.1 + 127089 0.67 0.924689
Target:  5'- cCCACgucgCGGC-CGCAgucgGGCACGGGc- -3'
miRNA:   3'- uGGUGa---GCUGcGCGUa---CUGUGCCUac -5'
24706 3' -54.9 NC_005264.1 + 6736 0.66 0.944465
Target:  5'- -gUACUCcGCG-GCGUGGCGCGGGa- -3'
miRNA:   3'- ugGUGAGcUGCgCGUACUGUGCCUac -5'
24706 3' -54.9 NC_005264.1 + 94394 0.7 0.782122
Target:  5'- gGCC-CUCcGCGCGCAgaccgcGGCGCGGAc- -3'
miRNA:   3'- -UGGuGAGcUGCGCGUa-----CUGUGCCUac -5'
24706 3' -54.9 NC_005264.1 + 20456 0.69 0.83484
Target:  5'- aGCCgGCggacagCGGCGCGCAUGggaggGCAUGGAa- -3'
miRNA:   3'- -UGG-UGa-----GCUGCGCGUAC-----UGUGCCUac -5'
24706 3' -54.9 NC_005264.1 + 140639 0.67 0.901095
Target:  5'- uCCACUUGcCGCGCAcGcCACaGAUGg -3'
miRNA:   3'- uGGUGAGCuGCGCGUaCuGUGcCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.