miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24706 3' -54.9 NC_005264.1 + 9007 1.07 0.005489
Target:  5'- uACCACUCGACGCGCAUGACACGGAUGc -3'
miRNA:   3'- -UGGUGAGCUGCGCGUACUGUGCCUAC- -5'
24706 3' -54.9 NC_005264.1 + 128034 1.07 0.005489
Target:  5'- uACCACUCGACGCGCAUGACACGGAUGc -3'
miRNA:   3'- -UGGUGAGCUGCGCGUACUGUGCCUAC- -5'
24706 3' -54.9 NC_005264.1 + 134902 0.74 0.592568
Target:  5'- gACCAC-CGACGCGCA-GACACGc--- -3'
miRNA:   3'- -UGGUGaGCUGCGCGUaCUGUGCcuac -5'
24706 3' -54.9 NC_005264.1 + 90766 0.73 0.612985
Target:  5'- uGCCGC-CGugGCuguGCAUGACAgGGAUu -3'
miRNA:   3'- -UGGUGaGCugCG---CGUACUGUgCCUAc -5'
24706 3' -54.9 NC_005264.1 + 16426 0.72 0.674328
Target:  5'- gGCCGCUCGACuGcCGCggGGCcugcccGCGGGUGu -3'
miRNA:   3'- -UGGUGAGCUG-C-GCGuaCUG------UGCCUAC- -5'
24706 3' -54.9 NC_005264.1 + 83250 0.71 0.734413
Target:  5'- cGCCGCU-GAUGCGC-UGGCGCGGc-- -3'
miRNA:   3'- -UGGUGAgCUGCGCGuACUGUGCCuac -5'
24706 3' -54.9 NC_005264.1 + 19428 0.71 0.753828
Target:  5'- cGCCGggUGugGcCGCggGGCGCGGGUGg -3'
miRNA:   3'- -UGGUgaGCugC-GCGuaCUGUGCCUAC- -5'
24706 3' -54.9 NC_005264.1 + 94394 0.7 0.782122
Target:  5'- gGCC-CUCcGCGCGCAgaccgcGGCGCGGAc- -3'
miRNA:   3'- -UGGuGAGcUGCGCGUa-----CUGUGCCUac -5'
24706 3' -54.9 NC_005264.1 + 57878 0.7 0.782122
Target:  5'- gGCgGCaCGGCgGC-CAUGGCGCGGAUGa -3'
miRNA:   3'- -UGgUGaGCUG-CGcGUACUGUGCCUAC- -5'
24706 3' -54.9 NC_005264.1 + 41583 0.7 0.809204
Target:  5'- aACCGCUCGACGUGgCGUcuaaACAUGGGc- -3'
miRNA:   3'- -UGGUGAGCUGCGC-GUAc---UGUGCCUac -5'
24706 3' -54.9 NC_005264.1 + 147568 0.69 0.826469
Target:  5'- gGCCGC-CGACGUGUgcGACGgGGAa- -3'
miRNA:   3'- -UGGUGaGCUGCGCGuaCUGUgCCUac -5'
24706 3' -54.9 NC_005264.1 + 20456 0.69 0.83484
Target:  5'- aGCCgGCggacagCGGCGCGCAUGggaggGCAUGGAa- -3'
miRNA:   3'- -UGG-UGa-----GCUGCGCGUAC-----UGUGCCUac -5'
24706 3' -54.9 NC_005264.1 + 110914 0.69 0.843027
Target:  5'- cGCCaaGCUCGGCGCGgAcGAC-CGGAg- -3'
miRNA:   3'- -UGG--UGAGCUGCGCgUaCUGuGCCUac -5'
24706 3' -54.9 NC_005264.1 + 136653 0.69 0.843027
Target:  5'- aGCC--UCGACGCGCGUGGaguaaaacaAUGGGUGc -3'
miRNA:   3'- -UGGugAGCUGCGCGUACUg--------UGCCUAC- -5'
24706 3' -54.9 NC_005264.1 + 94593 0.68 0.866408
Target:  5'- gGCCGCccgCGGCGCggGCAUGGCuuGGcgGu -3'
miRNA:   3'- -UGGUGa--GCUGCG--CGUACUGugCCuaC- -5'
24706 3' -54.9 NC_005264.1 + 16671 0.68 0.866408
Target:  5'- gGCCACgCGACGUGCAUgcgaggcaucGACACGa--- -3'
miRNA:   3'- -UGGUGaGCUGCGCGUA----------CUGUGCcuac -5'
24706 3' -54.9 NC_005264.1 + 62046 0.68 0.878112
Target:  5'- uACCAUcguaagagauuugCGGCGCGCAUGGCuuGGGc- -3'
miRNA:   3'- -UGGUGa------------GCUGCGCGUACUGugCCUac -5'
24706 3' -54.9 NC_005264.1 + 58890 0.68 0.880951
Target:  5'- cGCCACgCGuuCGCGCAUa--GCGGAUGc -3'
miRNA:   3'- -UGGUGaGCu-GCGCGUAcugUGCCUAC- -5'
24706 3' -54.9 NC_005264.1 + 58806 0.68 0.880951
Target:  5'- aACCGauuuccgCGGCGCGCGUcaaACACGGAa- -3'
miRNA:   3'- -UGGUga-----GCUGCGCGUAc--UGUGCCUac -5'
24706 3' -54.9 NC_005264.1 + 36345 0.68 0.887893
Target:  5'- gGCCGCaCGACGUucuCcgGACGCGGAg- -3'
miRNA:   3'- -UGGUGaGCUGCGc--GuaCUGUGCCUac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.