Results 21 - 40 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24707 | 3' | -55.2 | NC_005264.1 | + | 2666 | 0.69 | 0.781884 |
Target: 5'- -aGUCCUCugGCCCCGAccGCGAGgGCAGc -3' miRNA: 3'- ugCGGGGGugUGGGGCU--UGUUU-UGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 121693 | 0.69 | 0.781884 |
Target: 5'- -aGUCCUCugGCCCCGAccGCGAGgGCAGc -3' miRNA: 3'- ugCGGGGGugUGGGGCU--UGUUU-UGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 159961 | 0.69 | 0.791173 |
Target: 5'- cCGCCgCgCCGCGCCCCGGuCGAucGCAGc -3' miRNA: 3'- uGCGG-G-GGUGUGGGGCUuGUUu-UGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 40934 | 0.69 | 0.791173 |
Target: 5'- cCGCCgCgCCGCGCCCCGGuCGAucGCAGc -3' miRNA: 3'- uGCGG-G-GGUGUGGGGCUuGUUu-UGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 136931 | 0.69 | 0.791173 |
Target: 5'- aGCGCCCCCcgccaucuguuCGCCUgGGGCAucGCAAu -3' miRNA: 3'- -UGCGGGGGu----------GUGGGgCUUGUuuUGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 132736 | 0.69 | 0.791173 |
Target: 5'- cGCGCCgCCCGCAUCUCGAcucGCGAuuCu- -3' miRNA: 3'- -UGCGG-GGGUGUGGGGCU---UGUUuuGuu -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 49143 | 0.69 | 0.809302 |
Target: 5'- gGCGCCUCUgcccaagccuuGCACCCCGAcCAucACGu -3' miRNA: 3'- -UGCGGGGG-----------UGUGGGGCUuGUuuUGUu -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 95216 | 0.69 | 0.809302 |
Target: 5'- gACaCCCCUGCGCCCgcguggCGAACAAAACc- -3' miRNA: 3'- -UGcGGGGGUGUGGG------GCUUGUUUUGuu -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 66210 | 0.69 | 0.809302 |
Target: 5'- uGCGCCUCCGCGgCCagcgaaGGACuuGGCGAg -3' miRNA: 3'- -UGCGGGGGUGUgGGg-----CUUGuuUUGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 54687 | 0.69 | 0.817248 |
Target: 5'- uACGCuCCCCGCGaggcucgacggccCCCCGAucccgGCGGAAUAc -3' miRNA: 3'- -UGCG-GGGGUGU-------------GGGGCU-----UGUUUUGUu -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 43716 | 0.69 | 0.818122 |
Target: 5'- uGCGUCCUCGCccuCCCCcAGCAGAGCc- -3' miRNA: 3'- -UGCGGGGGUGu--GGGGcUUGUUUUGuu -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 128581 | 0.68 | 0.82677 |
Target: 5'- cGCGUCgCCCGCGCCUCGcuACAGAAg-- -3' miRNA: 3'- -UGCGG-GGGUGUGGGGCu-UGUUUUguu -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 9554 | 0.68 | 0.82677 |
Target: 5'- cGCGUCgCCCGCGCCUCGcuACAGAAg-- -3' miRNA: 3'- -UGCGG-GGGUGUGGGGCu-UGUUUUguu -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 35522 | 0.68 | 0.835236 |
Target: 5'- gUGCCCCCGuCGCCCaCGGGCGc----- -3' miRNA: 3'- uGCGGGGGU-GUGGG-GCUUGUuuuguu -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 113036 | 0.68 | 0.835236 |
Target: 5'- cGCGgCCCUGCACCUCGAcGCGGAGg-- -3' miRNA: 3'- -UGCgGGGGUGUGGGGCU-UGUUUUguu -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 38417 | 0.68 | 0.835236 |
Target: 5'- uACGCCCUgCugGCCCCuGGCA-AGCAAu -3' miRNA: 3'- -UGCGGGG-GugUGGGGcUUGUuUUGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 154549 | 0.68 | 0.835236 |
Target: 5'- gUGCCCCCGuCGCCCaCGGGCGc----- -3' miRNA: 3'- uGCGGGGGU-GUGGG-GCUUGUuuuguu -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 82966 | 0.68 | 0.835236 |
Target: 5'- uCGCCgCCGCGCCCCcguGACGAAGg-- -3' miRNA: 3'- uGCGGgGGUGUGGGGc--UUGUUUUguu -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 157444 | 0.68 | 0.835236 |
Target: 5'- uACGCCCUgCugGCCCCuGGCA-AGCAAu -3' miRNA: 3'- -UGCGGGG-GugUGGGGcUUGUuUUGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 120779 | 0.68 | 0.843513 |
Target: 5'- gACGCCa-CGCGCCgCGGGCAAcGCGAu -3' miRNA: 3'- -UGCGGggGUGUGGgGCUUGUUuUGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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