miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24707 3' -55.2 NC_005264.1 + 161834 0.69 0.772457
Target:  5'- cUGCCCCCcCACCacaCGGgcGCGGGGCAAg -3'
miRNA:   3'- uGCGGGGGuGUGGg--GCU--UGUUUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 161709 0.66 0.914441
Target:  5'- cGCGaCCCCCGCAUgcacaacgaCCCGcgccAUAAAGCAGu -3'
miRNA:   3'- -UGC-GGGGGUGUG---------GGGCu---UGUUUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 159961 0.69 0.791173
Target:  5'- cCGCCgCgCCGCGCCCCGGuCGAucGCAGc -3'
miRNA:   3'- uGCGG-G-GGUGUGGGGCUuGUUu-UGUU- -5'
24707 3' -55.2 NC_005264.1 + 159571 0.68 0.851593
Target:  5'- gGCGCUgaaugCCCAC-CCaCCGAgaaGCGAGACGAg -3'
miRNA:   3'- -UGCGG-----GGGUGuGG-GGCU---UGUUUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 159472 0.73 0.600249
Target:  5'- -aGCCCUCGcCGCCCCcagacgGAGCGGAGCGAa -3'
miRNA:   3'- ugCGGGGGU-GUGGGG------CUUGUUUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 159384 0.66 0.930603
Target:  5'- uCGCCCCCGagACCCucguggcgcuuugCGAGCAGcGCGGg -3'
miRNA:   3'- uGCGGGGGUg-UGGG-------------GCUUGUUuUGUU- -5'
24707 3' -55.2 NC_005264.1 + 159083 0.67 0.902101
Target:  5'- -gGCCCgCAgCGCCCCGGcgGCAAGAgGc -3'
miRNA:   3'- ugCGGGgGU-GUGGGGCU--UGUUUUgUu -5'
24707 3' -55.2 NC_005264.1 + 157743 0.67 0.879663
Target:  5'- uCGCCCCCAgGcguagaggaccccuCCCCGGACGGGcuggccgccuuGCGAc -3'
miRNA:   3'- uGCGGGGGUgU--------------GGGGCUUGUUU-----------UGUU- -5'
24707 3' -55.2 NC_005264.1 + 157444 0.68 0.835236
Target:  5'- uACGCCCUgCugGCCCCuGGCA-AGCAAu -3'
miRNA:   3'- -UGCGGGG-GugUGGGGcUUGUuUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 154549 0.68 0.835236
Target:  5'- gUGCCCCCGuCGCCCaCGGGCGc----- -3'
miRNA:   3'- uGCGGGGGU-GUGGG-GCUUGUuuuguu -5'
24707 3' -55.2 NC_005264.1 + 154504 0.66 0.925807
Target:  5'- uCGCCCCCucaaACCCUaggGGACGAcGGCGAc -3'
miRNA:   3'- uGCGGGGGug--UGGGG---CUUGUU-UUGUU- -5'
24707 3' -55.2 NC_005264.1 + 149562 0.67 0.895571
Target:  5'- gACuCUCCCGCggacaGCCCCGGGCGGAGgGGg -3'
miRNA:   3'- -UGcGGGGGUG-----UGGGGCUUGUUUUgUU- -5'
24707 3' -55.2 NC_005264.1 + 148790 0.66 0.931123
Target:  5'- cACGUUCCCACccgGCCCCGccACGuccGGACGAc -3'
miRNA:   3'- -UGCGGGGGUG---UGGGGCu-UGU---UUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 144775 0.66 0.920247
Target:  5'- aAUGCCCgCGCGCCCUGGcucGCGGcGCc- -3'
miRNA:   3'- -UGCGGGgGUGUGGGGCU---UGUUuUGuu -5'
24707 3' -55.2 NC_005264.1 + 144309 0.71 0.71353
Target:  5'- cGCGCCCUCagggggagacgGCGcCCCCGAucgGCAAGGCGu -3'
miRNA:   3'- -UGCGGGGG-----------UGU-GGGGCU---UGUUUUGUu -5'
24707 3' -55.2 NC_005264.1 + 143581 0.73 0.569403
Target:  5'- cCGUCCCCGgGgCCCGGAgGGAACGAg -3'
miRNA:   3'- uGCGGGGGUgUgGGGCUUgUUUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 140606 0.68 0.843513
Target:  5'- gGCGaCCgCCCAgACCgCCG-ACGAGGCGAc -3'
miRNA:   3'- -UGC-GG-GGGUgUGG-GGCuUGUUUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 136931 0.69 0.791173
Target:  5'- aGCGCCCCCcgccaucuguuCGCCUgGGGCAucGCAAu -3'
miRNA:   3'- -UGCGGGGGu----------GUGGGgCUUGUuuUGUU- -5'
24707 3' -55.2 NC_005264.1 + 134442 0.66 0.914441
Target:  5'- cACGCauaCCCACGCCCaGGAUcggcauggGGGACAAu -3'
miRNA:   3'- -UGCGg--GGGUGUGGGgCUUG--------UUUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 132736 0.69 0.791173
Target:  5'- cGCGCCgCCCGCAUCUCGAcucGCGAuuCu- -3'
miRNA:   3'- -UGCGG-GGGUGUGGGGCU---UGUUuuGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.