miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24709 3' -63.4 NC_005264.1 + 40500 0.66 0.620996
Target:  5'- uGCCCGUCgGCCCGCc--GUUCggaAGCCCc -3'
miRNA:   3'- -UGGGCGG-UGGGCGaacCAGGg--UCGGG- -5'
24709 3' -63.4 NC_005264.1 + 59785 0.66 0.620996
Target:  5'- gACUCGUCGCCCGCagGGggcgCgUAGCgCa -3'
miRNA:   3'- -UGGGCGGUGGGCGaaCCa---GgGUCGgG- -5'
24709 3' -63.4 NC_005264.1 + 159527 0.66 0.620996
Target:  5'- uGCCCGUCgGCCCGCc--GUUCggaAGCCCc -3'
miRNA:   3'- -UGGGCGG-UGGGCGaacCAGGg--UCGGG- -5'
24709 3' -63.4 NC_005264.1 + 66611 0.66 0.620996
Target:  5'- cGCCgCGUUGCCgGCgccGUCgCGGCCCg -3'
miRNA:   3'- -UGG-GCGGUGGgCGaacCAGgGUCGGG- -5'
24709 3' -63.4 NC_005264.1 + 93343 0.66 0.620996
Target:  5'- cCCCGCaAUCCGCgUGGaCCUuugGGCCUa -3'
miRNA:   3'- uGGGCGgUGGGCGaACCaGGG---UCGGG- -5'
24709 3' -63.4 NC_005264.1 + 83415 0.66 0.615179
Target:  5'- cCCCGCacCGCCCacGCUgGGUUCCGccgcggccucgccacGCCCg -3'
miRNA:   3'- uGGGCG--GUGGG--CGAaCCAGGGU---------------CGGG- -5'
24709 3' -63.4 NC_005264.1 + 157948 0.66 0.611304
Target:  5'- cGCUCGCC-UCCGC--GGUCCCcggAGaCCCc -3'
miRNA:   3'- -UGGGCGGuGGGCGaaCCAGGG---UC-GGG- -5'
24709 3' -63.4 NC_005264.1 + 158856 0.66 0.611304
Target:  5'- cAUgUGCCGCCCuGCUUGGcgguaaagCCGGCCg -3'
miRNA:   3'- -UGgGCGGUGGG-CGAACCag------GGUCGGg -5'
24709 3' -63.4 NC_005264.1 + 118384 0.66 0.611304
Target:  5'- --aCGCCugCCGCUUGGUaaugGGCaCCa -3'
miRNA:   3'- uggGCGGugGGCGAACCAggg-UCG-GG- -5'
24709 3' -63.4 NC_005264.1 + 39830 0.66 0.611304
Target:  5'- cAUgUGCCGCCCuGCUUGGcgguaaagCCGGCCg -3'
miRNA:   3'- -UGgGCGGUGGG-CGAACCag------GGUCGGg -5'
24709 3' -63.4 NC_005264.1 + 119616 0.66 0.611304
Target:  5'- cACgUGCCGCCUGCauucacUGGUagggCUCAGCCUc -3'
miRNA:   3'- -UGgGCGGUGGGCGa-----ACCA----GGGUCGGG- -5'
24709 3' -63.4 NC_005264.1 + 137135 0.66 0.611304
Target:  5'- -gCUGCCGCCCGCgccaaagaUGGUCUCAaacaUCCa -3'
miRNA:   3'- ugGGCGGUGGGCGa-------ACCAGGGUc---GGG- -5'
24709 3' -63.4 NC_005264.1 + 161292 0.66 0.601625
Target:  5'- gGCCCGCCuauuGCCgGCgcGGUCaacgCCgcggGGCCCc -3'
miRNA:   3'- -UGGGCGG----UGGgCGaaCCAG----GG----UCGGG- -5'
24709 3' -63.4 NC_005264.1 + 43421 0.66 0.601625
Target:  5'- cGCCCGCCAgCCGCgagUGcaaguaCAGCaCCa -3'
miRNA:   3'- -UGGGCGGUgGGCGa--ACcagg--GUCG-GG- -5'
24709 3' -63.4 NC_005264.1 + 158241 0.66 0.601625
Target:  5'- uACgCCGCCGCggCGCUggcgGGgagggccugcguUCCCGGCUCg -3'
miRNA:   3'- -UG-GGCGGUGg-GCGAa---CC------------AGGGUCGGG- -5'
24709 3' -63.4 NC_005264.1 + 39214 0.66 0.601625
Target:  5'- uACgCCGCCGCggCGCUggcgGGgagggccugcguUCCCGGCUCg -3'
miRNA:   3'- -UG-GGCGGUGg-GCGAa---CC------------AGGGUCGGG- -5'
24709 3' -63.4 NC_005264.1 + 42265 0.66 0.601625
Target:  5'- gGCCCGCCuauuGCCgGCgcGGUCaacgCCgcggGGCCCc -3'
miRNA:   3'- -UGGGCGG----UGGgCGaaCCAG----GG----UCGGG- -5'
24709 3' -63.4 NC_005264.1 + 66225 0.66 0.601625
Target:  5'- aACCagaGCCACgCCGCgugacugGGUUCCAauuuGCCg -3'
miRNA:   3'- -UGGg--CGGUG-GGCGaa-----CCAGGGU----CGGg -5'
24709 3' -63.4 NC_005264.1 + 85335 0.66 0.599692
Target:  5'- gACCCugaccgacucagGCCAUCCuaauucagagUGGaCCCAGCCCg -3'
miRNA:   3'- -UGGG------------CGGUGGGcga-------ACCaGGGUCGGG- -5'
24709 3' -63.4 NC_005264.1 + 122116 0.66 0.591967
Target:  5'- -gCgGCCgaggACCCGUUcgGGcgauUCCCGGCCCc -3'
miRNA:   3'- ugGgCGG----UGGGCGAa-CC----AGGGUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.