Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24713 | 5' | -57.3 | NC_005264.1 | + | 155934 | 0.66 | 0.871781 |
Target: 5'- -----gCCCACGGaaagcCGCgCGCUGGGa- -3' miRNA: 3'- cuaaaaGGGUGCCa----GCG-GCGACCCca -5' |
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24713 | 5' | -57.3 | NC_005264.1 | + | 47112 | 0.66 | 0.871055 |
Target: 5'- -----aCCCGCGGaUgGCCGUaaugcuuUGGGGg -3' miRNA: 3'- cuaaaaGGGUGCC-AgCGGCG-------ACCCCa -5' |
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24713 | 5' | -57.3 | NC_005264.1 | + | 34745 | 0.66 | 0.864427 |
Target: 5'- ---cUUCCCGgcgcgcCGGUCGCCGCUGucGc -3' miRNA: 3'- cuaaAAGGGU------GCCAGCGGCGACccCa -5' |
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24713 | 5' | -57.3 | NC_005264.1 | + | 10986 | 0.66 | 0.864427 |
Target: 5'- -----cCCCACGuGUCGCCGCcGGa-- -3' miRNA: 3'- cuaaaaGGGUGC-CAGCGGCGaCCcca -5' |
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24713 | 5' | -57.3 | NC_005264.1 | + | 121789 | 0.66 | 0.864427 |
Target: 5'- ----gUCCCcCGG-CGCCGUaccgucUGGGGa -3' miRNA: 3'- cuaaaAGGGuGCCaGCGGCG------ACCCCa -5' |
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24713 | 5' | -57.3 | NC_005264.1 | + | 2763 | 0.66 | 0.864427 |
Target: 5'- ----gUCCCcCGG-CGCCGUaccgucUGGGGa -3' miRNA: 3'- cuaaaAGGGuGCCaGCGGCG------ACCCCa -5' |
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24713 | 5' | -57.3 | NC_005264.1 | + | 30739 | 0.66 | 0.856869 |
Target: 5'- ---cUUCCCGCGcaaagaGCCGCUcaGGGGa -3' miRNA: 3'- cuaaAAGGGUGCcag---CGGCGA--CCCCa -5' |
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24713 | 5' | -57.3 | NC_005264.1 | + | 150950 | 0.66 | 0.849112 |
Target: 5'- cAUUUUCCCACGGcccUCGCgGCUcGGc- -3' miRNA: 3'- cUAAAAGGGUGCC---AGCGgCGAcCCca -5' |
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24713 | 5' | -57.3 | NC_005264.1 | + | 74112 | 0.67 | 0.841162 |
Target: 5'- ----gUCgaCGCuGUCGCgGCUGGGGUc -3' miRNA: 3'- cuaaaAGg-GUGcCAGCGgCGACCCCA- -5' |
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24713 | 5' | -57.3 | NC_005264.1 | + | 156616 | 0.67 | 0.833027 |
Target: 5'- ----gUCUCGCGG-CgGCCGCggcgGGGGg -3' miRNA: 3'- cuaaaAGGGUGCCaG-CGGCGa---CCCCa -5' |
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24713 | 5' | -57.3 | NC_005264.1 | + | 37589 | 0.67 | 0.833027 |
Target: 5'- ----gUCUCGCGG-CgGCCGCggcgGGGGg -3' miRNA: 3'- cuaaaAGGGUGCCaG-CGGCGa---CCCCa -5' |
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24713 | 5' | -57.3 | NC_005264.1 | + | 904 | 0.67 | 0.816226 |
Target: 5'- -----gCCC-CGuGUCgcggGCCGCUGGGGg -3' miRNA: 3'- cuaaaaGGGuGC-CAG----CGGCGACCCCa -5' |
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24713 | 5' | -57.3 | NC_005264.1 | + | 31924 | 0.67 | 0.816226 |
Target: 5'- cAUUUUCCCACGGccUCGCgGCUcGGc- -3' miRNA: 3'- cUAAAAGGGUGCC--AGCGgCGAcCCca -5' |
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24713 | 5' | -57.3 | NC_005264.1 | + | 119930 | 0.67 | 0.816226 |
Target: 5'- -----gCCC-CGuGUCgcggGCCGCUGGGGg -3' miRNA: 3'- cuaaaaGGGuGC-CAG----CGGCGACCCCa -5' |
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24713 | 5' | -57.3 | NC_005264.1 | + | 20496 | 0.67 | 0.814509 |
Target: 5'- -cUUUUgCCUGCGGUCGCUGCgccgagaagccaGGGGc -3' miRNA: 3'- cuAAAA-GGGUGCCAGCGGCGa-----------CCCCa -5' |
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24713 | 5' | -57.3 | NC_005264.1 | + | 6433 | 0.68 | 0.752703 |
Target: 5'- ----cUCUCGCGGcggCGUCGCUGGcGGa -3' miRNA: 3'- cuaaaAGGGUGCCa--GCGGCGACC-CCa -5' |
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24713 | 5' | -57.3 | NC_005264.1 | + | 125460 | 0.68 | 0.752703 |
Target: 5'- ----cUCUCGCGGcggCGUCGCUGGcGGa -3' miRNA: 3'- cuaaaAGGGUGCCa--GCGGCGACC-CCa -5' |
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24713 | 5' | -57.3 | NC_005264.1 | + | 160521 | 0.69 | 0.733487 |
Target: 5'- ---aUUCCuUACG--CGCCGCUGGGGg -3' miRNA: 3'- cuaaAAGG-GUGCcaGCGGCGACCCCa -5' |
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24713 | 5' | -57.3 | NC_005264.1 | + | 104856 | 0.69 | 0.694092 |
Target: 5'- ------gCCACGGcCGCCGCgcGGGGa -3' miRNA: 3'- cuaaaagGGUGCCaGCGGCGa-CCCCa -5' |
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24713 | 5' | -57.3 | NC_005264.1 | + | 160939 | 0.71 | 0.623521 |
Target: 5'- ----aUCCCGCaGUCGCgGC-GGGGUc -3' miRNA: 3'- cuaaaAGGGUGcCAGCGgCGaCCCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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