miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24720 3' -56.2 NC_005264.1 + 155949 0.69 0.728143
Target:  5'- cGCGCUGGGAcuGCgCggcuCGCGGACGc -3'
miRNA:   3'- cCGCGACCCU--CG-GauauGCGUCUGUa -5'
24720 3' -56.2 NC_005264.1 + 142751 0.67 0.861561
Target:  5'- cGCGCgUGGGAGacauggacaagcUCUacucgcaGUACGCGGACAg -3'
miRNA:   3'- cCGCG-ACCCUC------------GGA-------UAUGCGUCUGUa -5'
24720 3' -56.2 NC_005264.1 + 137289 0.69 0.747804
Target:  5'- cGGCGUUGGcGGCg---ACGCGGGCGUa -3'
miRNA:   3'- -CCGCGACCcUCGgauaUGCGUCUGUA- -5'
24720 3' -56.2 NC_005264.1 + 136359 0.68 0.776501
Target:  5'- gGGCGCUGGGcgcuGCCg--GCGCGaAUAg -3'
miRNA:   3'- -CCGCGACCCu---CGGauaUGCGUcUGUa -5'
24720 3' -56.2 NC_005264.1 + 133745 1.08 0.003147
Target:  5'- cGGCGCUGGGAGCCUAUACGCAGACAUc -3'
miRNA:   3'- -CCGCGACCCUCGGAUAUGCGUCUGUA- -5'
24720 3' -56.2 NC_005264.1 + 133398 0.66 0.869125
Target:  5'- cGGCGCagcccguUGGuGGCCccaaagccUACGCGGACAUg -3'
miRNA:   3'- -CCGCG-------ACCcUCGGau------AUGCGUCUGUA- -5'
24720 3' -56.2 NC_005264.1 + 129410 0.71 0.626265
Target:  5'- aGCGC-GGGGGUUUAUucuCGCGGGCGUa -3'
miRNA:   3'- cCGCGaCCCUCGGAUAu--GCGUCUGUA- -5'
24720 3' -56.2 NC_005264.1 + 122216 0.67 0.862327
Target:  5'- cGGCGCgGGGAaggGCUUAUuuCGCAGGa-- -3'
miRNA:   3'- -CCGCGaCCCU---CGGAUAu-GCGUCUgua -5'
24720 3' -56.2 NC_005264.1 + 116540 0.66 0.897825
Target:  5'- gGGuCGUUGGGGGCU---ACGgAGGCGg -3'
miRNA:   3'- -CC-GCGACCCUCGGauaUGCgUCUGUa -5'
24720 3' -56.2 NC_005264.1 + 116426 0.69 0.757485
Target:  5'- aGGuCGCUGGGGGCguCUGgccGCGgGGGCGa -3'
miRNA:   3'- -CC-GCGACCCUCG--GAUa--UGCgUCUGUa -5'
24720 3' -56.2 NC_005264.1 + 116271 0.66 0.86987
Target:  5'- cGCGCgacuUGGaAGCCgugGCGCGGGCGg -3'
miRNA:   3'- cCGCG----ACCcUCGGauaUGCGUCUGUa -5'
24720 3' -56.2 NC_005264.1 + 102164 0.67 0.838462
Target:  5'- aGGCcUUGGGAGCCcagcUGCGC-GACGa -3'
miRNA:   3'- -CCGcGACCCUCGGau--AUGCGuCUGUa -5'
24720 3' -56.2 NC_005264.1 + 98511 0.7 0.708145
Target:  5'- aGGCGCcgacgGGGGGCCUcagucUugGCAGcgGCAa -3'
miRNA:   3'- -CCGCGa----CCCUCGGAu----AugCGUC--UGUa -5'
24720 3' -56.2 NC_005264.1 + 98049 0.72 0.554664
Target:  5'- cGGUGCccaUGGGGGCgCUGcGCGCAGAUc- -3'
miRNA:   3'- -CCGCG---ACCCUCG-GAUaUGCGUCUGua -5'
24720 3' -56.2 NC_005264.1 + 95794 0.69 0.732104
Target:  5'- aGGCGCUuccgccgcuuacgucGGGGGCCU--GCGCAaGGCc- -3'
miRNA:   3'- -CCGCGA---------------CCCUCGGAuaUGCGU-CUGua -5'
24720 3' -56.2 NC_005264.1 + 95740 0.71 0.615963
Target:  5'- gGGCGCuggagacggccaUGGGGGaUCUGUACGCGG-CGUg -3'
miRNA:   3'- -CCGCG------------ACCCUC-GGAUAUGCGUCuGUA- -5'
24720 3' -56.2 NC_005264.1 + 91329 0.66 0.903606
Target:  5'- aGGCGCUGcGGuuggcugugaaGGCUgggucaaUGUACGCAGuCAa -3'
miRNA:   3'- -CCGCGAC-CC-----------UCGG-------AUAUGCGUCuGUa -5'
24720 3' -56.2 NC_005264.1 + 74416 0.69 0.73802
Target:  5'- uGGCuGC-GGGAGCCcAUGuCGguGACAa -3'
miRNA:   3'- -CCG-CGaCCCUCGGaUAU-GCguCUGUa -5'
24720 3' -56.2 NC_005264.1 + 69674 0.7 0.677682
Target:  5'- cGGCGCUGGG-GCCUugGUucucCGCGGuuGCGUc -3'
miRNA:   3'- -CCGCGACCCuCGGA--UAu---GCGUC--UGUA- -5'
24720 3' -56.2 NC_005264.1 + 62031 0.68 0.811127
Target:  5'- cGCGCUcuagcaagguucGGAGCCUGcUGCGcCAGGCGUg -3'
miRNA:   3'- cCGCGAc-----------CCUCGGAU-AUGC-GUCUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.