miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24720 5' -53.6 NC_005264.1 + 21340 0.66 0.965519
Target:  5'- uGCAUUgc-GCUGCcguucgucccGGGC-CGCCUCGGc -3'
miRNA:   3'- -UGUAGaaaCGAUG----------UCCGcGCGGAGUC- -5'
24720 5' -53.6 NC_005264.1 + 95658 0.66 0.962091
Target:  5'- cGCGUCauagcGCUGCAGGC-CGCCa--- -3'
miRNA:   3'- -UGUAGaaa--CGAUGUCCGcGCGGaguc -5'
24720 5' -53.6 NC_005264.1 + 14082 0.66 0.962091
Target:  5'- aGCAUCagag--ACAGGCGUGCCUggaCGGg -3'
miRNA:   3'- -UGUAGaaacgaUGUCCGCGCGGA---GUC- -5'
24720 5' -53.6 NC_005264.1 + 65603 0.66 0.962091
Target:  5'- cACAUCUUgcUGCUGCGuuCGCGgCUCGu -3'
miRNA:   3'- -UGUAGAA--ACGAUGUccGCGCgGAGUc -5'
24720 5' -53.6 NC_005264.1 + 126411 0.66 0.958054
Target:  5'- uCGUCUccgcgGcCUGCAGGUacuugggGCGCCUCAc -3'
miRNA:   3'- uGUAGAaa---C-GAUGUCCG-------CGCGGAGUc -5'
24720 5' -53.6 NC_005264.1 + 51098 0.66 0.946032
Target:  5'- -gGUCgccggUGCUGCGGucugcuCGCGCCUCGa -3'
miRNA:   3'- ugUAGaa---ACGAUGUCc-----GCGCGGAGUc -5'
24720 5' -53.6 NC_005264.1 + 55860 0.66 0.946032
Target:  5'- gGCGUCUaUGCgGCuccuGGCGaugGCCUCAc -3'
miRNA:   3'- -UGUAGAaACGaUGu---CCGCg--CGGAGUc -5'
24720 5' -53.6 NC_005264.1 + 72440 0.66 0.946032
Target:  5'- cGCGUCgaacacgUUGUaucgGCGGGCGCcGCCggUCGGa -3'
miRNA:   3'- -UGUAGa------AACGa---UGUCCGCG-CGG--AGUC- -5'
24720 5' -53.6 NC_005264.1 + 19718 0.67 0.943289
Target:  5'- uGCGUUUUUGUUACAGGaucuucuagguucgcCGUGCCccCAGc -3'
miRNA:   3'- -UGUAGAAACGAUGUCC---------------GCGCGGa-GUC- -5'
24720 5' -53.6 NC_005264.1 + 58680 0.67 0.936539
Target:  5'- -------cGCUGCAGGCGCacccgGCCUCu- -3'
miRNA:   3'- uguagaaaCGAUGUCCGCG-----CGGAGuc -5'
24720 5' -53.6 NC_005264.1 + 90214 0.68 0.913942
Target:  5'- cGCAUCggUGUUAUuugcgaugaacgaGGGgGUGCUUCAGg -3'
miRNA:   3'- -UGUAGaaACGAUG-------------UCCgCGCGGAGUC- -5'
24720 5' -53.6 NC_005264.1 + 66195 0.68 0.908417
Target:  5'- cGCAUCg--GCggGC-GGUGCGCCUCc- -3'
miRNA:   3'- -UGUAGaaaCGa-UGuCCGCGCGGAGuc -5'
24720 5' -53.6 NC_005264.1 + 61235 0.68 0.901392
Target:  5'- cACGUUg--GCgaugGCGcgcuccagcucacGGCGCGCCUCGGc -3'
miRNA:   3'- -UGUAGaaaCGa---UGU-------------CCGCGCGGAGUC- -5'
24720 5' -53.6 NC_005264.1 + 97425 0.69 0.881462
Target:  5'- gGCAgugagcGCUGCGGGCGCcGCCgCGGa -3'
miRNA:   3'- -UGUagaaa-CGAUGUCCGCG-CGGaGUC- -5'
24720 5' -53.6 NC_005264.1 + 93425 0.69 0.881462
Target:  5'- uACAUaCUccgacgGCgGCAGGCGCGCCUa-- -3'
miRNA:   3'- -UGUA-GAaa----CGaUGUCCGCGCGGAguc -5'
24720 5' -53.6 NC_005264.1 + 86553 0.69 0.881462
Target:  5'- -aAUCUUUGCUcaaacaguCGGGUGCGCaCUCuGg -3'
miRNA:   3'- ugUAGAAACGAu-------GUCCGCGCG-GAGuC- -5'
24720 5' -53.6 NC_005264.1 + 54409 0.69 0.874128
Target:  5'- -aGUCgUUGUUGCGcGGCGCGCCgacUAGg -3'
miRNA:   3'- ugUAGaAACGAUGU-CCGCGCGGa--GUC- -5'
24720 5' -53.6 NC_005264.1 + 71672 0.69 0.874128
Target:  5'- cACGUgUUUGCUGCAccccGGCGUG-UUCAGa -3'
miRNA:   3'- -UGUAgAAACGAUGU----CCGCGCgGAGUC- -5'
24720 5' -53.6 NC_005264.1 + 30388 0.7 0.834168
Target:  5'- cGCGUCUcgGCggcgGCGGucGCGCGCCggugCGGa -3'
miRNA:   3'- -UGUAGAaaCGa---UGUC--CGCGCGGa---GUC- -5'
24720 5' -53.6 NC_005264.1 + 149415 0.7 0.834168
Target:  5'- cGCGUCUcgGCggcgGCGGucGCGCGCCggugCGGa -3'
miRNA:   3'- -UGUAGAaaCGa---UGUC--CGCGCGGa---GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.