miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24723 3' -51.4 NC_005264.1 + 22714 0.68 0.979095
Target:  5'- aCGAGUGcgGCGCGCAaGCguGUGUCUg -3'
miRNA:   3'- gGCUCAUa-UGCGUGUgCGgcUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 23414 0.68 0.985112
Target:  5'- gCCGAGc--ACGCGUACGCCagcGGUGcCCg -3'
miRNA:   3'- -GGCUCauaUGCGUGUGCGG---CUACaGG- -5'
24723 3' -51.4 NC_005264.1 + 24503 0.68 0.985112
Target:  5'- uUCGGGcgccuUGUcGCGCACGCGCC-AUGaCCa -3'
miRNA:   3'- -GGCUC-----AUA-UGCGUGUGCGGcUACaGG- -5'
24723 3' -51.4 NC_005264.1 + 27674 0.68 0.979095
Target:  5'- aCCGAG-GUACGCgGCugGCCucUG-CCu -3'
miRNA:   3'- -GGCUCaUAUGCG-UGugCGGcuACaGG- -5'
24723 3' -51.4 NC_005264.1 + 27929 0.71 0.931869
Target:  5'- aCCGcGGUGUugGCguucuGCGCGUCGGUgGUCg -3'
miRNA:   3'- -GGC-UCAUAugCG-----UGUGCGGCUA-CAGg -5'
24723 3' -51.4 NC_005264.1 + 28346 0.67 0.992202
Target:  5'- aCGGGUAgcggGCGaCACGCGCaauuggagugcggcaGAauUGUCCc -3'
miRNA:   3'- gGCUCAUa---UGC-GUGUGCGg--------------CU--ACAGG- -5'
24723 3' -51.4 NC_005264.1 + 29666 0.66 0.994831
Target:  5'- cCCGuGgccagAUGC-CGCGUCGAUcGUCCc -3'
miRNA:   3'- -GGCuCaua--UGCGuGUGCGGCUA-CAGG- -5'
24723 3' -51.4 NC_005264.1 + 30130 0.72 0.883114
Target:  5'- aCCGAGcugcgGCGCAUugGCCGAgaaacacaacUCCa -3'
miRNA:   3'- -GGCUCaua--UGCGUGugCGGCUac--------AGG- -5'
24723 3' -51.4 NC_005264.1 + 31960 0.74 0.828644
Target:  5'- gCGAGUGgcgGCG-ACGgGCCGcGUGUCCg -3'
miRNA:   3'- gGCUCAUa--UGCgUGUgCGGC-UACAGG- -5'
24723 3' -51.4 NC_005264.1 + 33791 0.66 0.994831
Target:  5'- aUCGAGc---CGCGCACGCCGcuuUGgaCCg -3'
miRNA:   3'- -GGCUCauauGCGUGUGCGGCu--ACa-GG- -5'
24723 3' -51.4 NC_005264.1 + 39268 0.73 0.868598
Target:  5'- cCCGAGacUugGCGCgACGCCGAaGaCCa -3'
miRNA:   3'- -GGCUCauAugCGUG-UGCGGCUaCaGG- -5'
24723 3' -51.4 NC_005264.1 + 40416 0.69 0.97144
Target:  5'- aCGcGUA-ACGCACucgccuuuccCGUCGAUGUCCu -3'
miRNA:   3'- gGCuCAUaUGCGUGu---------GCGGCUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 40663 0.66 0.99555
Target:  5'- gCGAGccuuacUACGCugGCGCCGuucggcGUCg -3'
miRNA:   3'- gGCUCau----AUGCGugUGCGGCua----CAGg -5'
24723 3' -51.4 NC_005264.1 + 42934 0.66 0.996185
Target:  5'- aCCGAGUAccccaaGCGCuuGUagaUGGUGUCCc -3'
miRNA:   3'- -GGCUCAUaug---CGUGugCG---GCUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 43661 0.66 0.993112
Target:  5'- aCG-GUcgGCGCgcuGCGCGCCGgcGUUa -3'
miRNA:   3'- gGCuCAuaUGCG---UGUGCGGCuaCAGg -5'
24723 3' -51.4 NC_005264.1 + 45406 0.66 0.996185
Target:  5'- gCGAacGUGUGCGCcgACgAUGCCaGGUGUUCc -3'
miRNA:   3'- gGCU--CAUAUGCG--UG-UGCGG-CUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 45568 0.67 0.992096
Target:  5'- cCCGuGUcgGCGCGCACGa----GUCCc -3'
miRNA:   3'- -GGCuCAuaUGCGUGUGCggcuaCAGG- -5'
24723 3' -51.4 NC_005264.1 + 45865 0.66 0.994021
Target:  5'- uUCGAGUcUGCGCGC-CGCCaAUG-Ca -3'
miRNA:   3'- -GGCUCAuAUGCGUGuGCGGcUACaGg -5'
24723 3' -51.4 NC_005264.1 + 45988 0.7 0.950469
Target:  5'- cCUGAGUAUACGC-CAgGCgGcaguAUGUUCg -3'
miRNA:   3'- -GGCUCAUAUGCGuGUgCGgC----UACAGG- -5'
24723 3' -51.4 NC_005264.1 + 46281 0.69 0.968489
Target:  5'- gCCGAGc-UGCGCAUcgACGCCGcc-UCCg -3'
miRNA:   3'- -GGCUCauAUGCGUG--UGCGGCuacAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.