miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24723 3' -51.4 NC_005264.1 + 3625 0.66 0.996185
Target:  5'- gCGAGg--GCGgGCGCGCUGAcauucGUCg -3'
miRNA:   3'- gGCUCauaUGCgUGUGCGGCUa----CAGg -5'
24723 3' -51.4 NC_005264.1 + 4790 0.68 0.976735
Target:  5'- aCUGGGUcGUugGCGaACGCCcugGUCCa -3'
miRNA:   3'- -GGCUCA-UAugCGUgUGCGGcuaCAGG- -5'
24723 3' -51.4 NC_005264.1 + 5144 0.66 0.99555
Target:  5'- cUCGA---UGCGCGgcCGCGCCGcAUcGUCCg -3'
miRNA:   3'- -GGCUcauAUGCGU--GUGCGGC-UA-CAGG- -5'
24723 3' -51.4 NC_005264.1 + 5623 0.67 0.992096
Target:  5'- aUCGGGc---CGCGCgACGCUaGGUGUCCc -3'
miRNA:   3'- -GGCUCauauGCGUG-UGCGG-CUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 6766 0.66 0.994021
Target:  5'- aUCGAuGUAUuCGCGCAgCGCCGGcaUGgcuaCCg -3'
miRNA:   3'- -GGCU-CAUAuGCGUGU-GCGGCU--ACa---GG- -5'
24723 3' -51.4 NC_005264.1 + 7152 0.7 0.950469
Target:  5'- cCUGAGgcUACGC-CcUGCCGAguacaccccgcUGUCCa -3'
miRNA:   3'- -GGCUCauAUGCGuGuGCGGCU-----------ACAGG- -5'
24723 3' -51.4 NC_005264.1 + 8232 0.69 0.967563
Target:  5'- uCCGAGUAcgccaGCGCgguuagucuggccaGCgGCGCCcuGGUGUCCg -3'
miRNA:   3'- -GGCUCAUa----UGCG--------------UG-UGCGG--CUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 9124 0.69 0.97144
Target:  5'- gCCGAGUAgguaguaACGCaACAcCGCCaccagaGAUGUCUc -3'
miRNA:   3'- -GGCUCAUa------UGCG-UGU-GCGG------CUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 12962 0.68 0.983275
Target:  5'- aCCGGGcg-GCGCGCGcCGCCGAc---- -3'
miRNA:   3'- -GGCUCauaUGCGUGU-GCGGCUacagg -5'
24723 3' -51.4 NC_005264.1 + 14058 0.74 0.811341
Target:  5'- gCCGGGUGggaACGUGCACGCCaGAcuUCCc -3'
miRNA:   3'- -GGCUCAUa--UGCGUGUGCGG-CUacAGG- -5'
24723 3' -51.4 NC_005264.1 + 14541 0.7 0.941648
Target:  5'- aCCGGc---GCGCACGCGCgCGGUcUCCa -3'
miRNA:   3'- -GGCUcauaUGCGUGUGCG-GCUAcAGG- -5'
24723 3' -51.4 NC_005264.1 + 14718 0.66 0.994021
Target:  5'- gCGuGUGUACGCGCACGU----GUCg -3'
miRNA:   3'- gGCuCAUAUGCGUGUGCGgcuaCAGg -5'
24723 3' -51.4 NC_005264.1 + 16491 0.75 0.76248
Target:  5'- aCGAGUcacaugcgucauucgGCGCGCACGCCGAgaGUCa -3'
miRNA:   3'- gGCUCAua-------------UGCGUGUGCGGCUa-CAGg -5'
24723 3' -51.4 NC_005264.1 + 16575 0.71 0.929797
Target:  5'- gCCGGGgcggcgGCGCACAUgacuccgGCCGAcccagaacauugugUGUCCu -3'
miRNA:   3'- -GGCUCaua---UGCGUGUG-------CGGCU--------------ACAGG- -5'
24723 3' -51.4 NC_005264.1 + 16833 0.73 0.853219
Target:  5'- cCCGAGcccauaACGCGCACGCCGuagagGcCCu -3'
miRNA:   3'- -GGCUCaua---UGCGUGUGCGGCua---CaGG- -5'
24723 3' -51.4 NC_005264.1 + 18525 0.68 0.985802
Target:  5'- aUCGGGg--GCGCcgucucccccugaggGCGCGCCGgcGUCa -3'
miRNA:   3'- -GGCUCauaUGCG---------------UGUGCGGCuaCAGg -5'
24723 3' -51.4 NC_005264.1 + 20555 0.66 0.995343
Target:  5'- gCGAG-AUAUGUaucgcgcucugccaGCGCGCgGGUGuUCCa -3'
miRNA:   3'- gGCUCaUAUGCG--------------UGUGCGgCUAC-AGG- -5'
24723 3' -51.4 NC_005264.1 + 21254 0.75 0.755751
Target:  5'- cUCGAGUGUGCGCGC-CGCggaGGUGguaacgCCa -3'
miRNA:   3'- -GGCUCAUAUGCGUGuGCGg--CUACa-----GG- -5'
24723 3' -51.4 NC_005264.1 + 21565 0.68 0.981272
Target:  5'- uCCGAGg--ACGCcgGCGCCGAga-CCg -3'
miRNA:   3'- -GGCUCauaUGCGugUGCGGCUacaGG- -5'
24723 3' -51.4 NC_005264.1 + 22138 0.66 0.99555
Target:  5'- aCGAGcgcgACGCGCgccuuagauuGCGCCGcgGgCCg -3'
miRNA:   3'- gGCUCaua-UGCGUG----------UGCGGCuaCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.