miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24723 3' -51.4 NC_005264.1 + 135837 1.15 0.004241
Target:  5'- gCCGAGUAUACGCACACGCCGAUGUCCg -3'
miRNA:   3'- -GGCUCAUAUGCGUGUGCGGCUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 82325 0.7 0.950469
Target:  5'- aCGAcGU-UGCGCAcCGCGgCGAUGUUCu -3'
miRNA:   3'- gGCU-CAuAUGCGU-GUGCgGCUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 75240 0.69 0.961951
Target:  5'- gCCGucuuGUAUaACGCgaccACGCGCCG-UGUUCg -3'
miRNA:   3'- -GGCu---CAUA-UGCG----UGUGCGGCuACAGG- -5'
24723 3' -51.4 NC_005264.1 + 61457 0.66 0.996185
Target:  5'- gCCGAGUugcucgaGCGCcguucguucuaGCGCGCCGAcGcgCCc -3'
miRNA:   3'- -GGCUCAua-----UGCG-----------UGUGCGGCUaCa-GG- -5'
24723 3' -51.4 NC_005264.1 + 150987 0.74 0.828644
Target:  5'- gCGAGUGgcgGCG-ACGgGCCGcGUGUCCg -3'
miRNA:   3'- gGCUCAUa--UGCgUGUgCGGC-UACAGG- -5'
24723 3' -51.4 NC_005264.1 + 83775 0.73 0.861014
Target:  5'- gUGAGUAUAaccucguaGUACACGCCGuaguUGUCa -3'
miRNA:   3'- gGCUCAUAUg-------CGUGUGCGGCu---ACAGg -5'
24723 3' -51.4 NC_005264.1 + 158295 0.73 0.868598
Target:  5'- cCCGAGacUugGCGCgACGCCGAaGaCCa -3'
miRNA:   3'- -GGCUCauAugCGUG-UGCGGCUaCaGG- -5'
24723 3' -51.4 NC_005264.1 + 30130 0.72 0.883114
Target:  5'- aCCGAGcugcgGCGCAUugGCCGAgaaacacaacUCCa -3'
miRNA:   3'- -GGCUCaua--UGCGUGugCGGCUac--------AGG- -5'
24723 3' -51.4 NC_005264.1 + 27929 0.71 0.931869
Target:  5'- aCCGcGGUGUugGCguucuGCGCGUCGGUgGUCg -3'
miRNA:   3'- -GGC-UCAUAugCG-----UGUGCGGCUA-CAGg -5'
24723 3' -51.4 NC_005264.1 + 7152 0.7 0.950469
Target:  5'- cCUGAGgcUACGC-CcUGCCGAguacaccccgcUGUCCa -3'
miRNA:   3'- -GGCUCauAUGCGuGuGCGGCU-----------ACAGG- -5'
24723 3' -51.4 NC_005264.1 + 60523 0.71 0.93688
Target:  5'- gUGAGUAaccUACGCAUGCcgGCCGAggUGUCg -3'
miRNA:   3'- gGCUCAU---AUGCGUGUG--CGGCU--ACAGg -5'
24723 3' -51.4 NC_005264.1 + 16575 0.71 0.929797
Target:  5'- gCCGGGgcggcgGCGCACAUgacuccgGCCGAcccagaacauugugUGUCCu -3'
miRNA:   3'- -GGCUCaua---UGCGUGUG-------CGGCU--------------ACAGG- -5'
24723 3' -51.4 NC_005264.1 + 148303 0.76 0.696175
Target:  5'- aCCGcGc--GCGUGCGCGCCGGUGUUCg -3'
miRNA:   3'- -GGCuCauaUGCGUGUGCGGCUACAGG- -5'
24723 3' -51.4 NC_005264.1 + 63352 0.7 0.941648
Target:  5'- aCGAGUGUguccGCGUACGCGauucUGUCCa -3'
miRNA:   3'- gGCUCAUA----UGCGUGUGCggcuACAGG- -5'
24723 3' -51.4 NC_005264.1 + 16491 0.75 0.76248
Target:  5'- aCGAGUcacaugcgucauucgGCGCGCACGCCGAgaGUCa -3'
miRNA:   3'- gGCUCAua-------------UGCGUGUGCGGCUa-CAGg -5'
24723 3' -51.4 NC_005264.1 + 84150 0.72 0.890035
Target:  5'- cCCGGGaagugGUcgcaGCGCGCGCGCCGGaccUGUUUa -3'
miRNA:   3'- -GGCUCa----UA----UGCGUGUGCGGCU---ACAGG- -5'
24723 3' -51.4 NC_005264.1 + 112036 0.7 0.946177
Target:  5'- ------cUGCGCGCGCGCCGA--UCCg -3'
miRNA:   3'- ggcucauAUGCGUGUGCGGCUacAGG- -5'
24723 3' -51.4 NC_005264.1 + 143290 0.69 0.961951
Target:  5'- aCCGAGgaagaGCAC-CGCCGAaucGUCUa -3'
miRNA:   3'- -GGCUCauaugCGUGuGCGGCUa--CAGG- -5'
24723 3' -51.4 NC_005264.1 + 14058 0.74 0.811341
Target:  5'- gCCGGGUGggaACGUGCACGCCaGAcuUCCc -3'
miRNA:   3'- -GGCUCAUa--UGCGUGUGCGG-CUacAGG- -5'
24723 3' -51.4 NC_005264.1 + 58369 0.73 0.868598
Target:  5'- gCGGGgccgGCGCGauauGCGCCGGauUGUCCa -3'
miRNA:   3'- gGCUCaua-UGCGUg---UGCGGCU--ACAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.