Results 21 - 40 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24723 | 3' | -51.4 | NC_005264.1 | + | 40416 | 0.69 | 0.97144 |
Target: 5'- aCGcGUA-ACGCACucgccuuuccCGUCGAUGUCCu -3' miRNA: 3'- gGCuCAUaUGCGUGu---------GCGGCUACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 75240 | 0.69 | 0.961951 |
Target: 5'- gCCGucuuGUAUaACGCgaccACGCGCCG-UGUUCg -3' miRNA: 3'- -GGCu---CAUA-UGCG----UGUGCGGCuACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 16575 | 0.71 | 0.929797 |
Target: 5'- gCCGGGgcggcgGCGCACAUgacuccgGCCGAcccagaacauugugUGUCCu -3' miRNA: 3'- -GGCUCaua---UGCGUGUG-------CGGCU--------------ACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 14058 | 0.74 | 0.811341 |
Target: 5'- gCCGGGUGggaACGUGCACGCCaGAcuUCCc -3' miRNA: 3'- -GGCUCAUa--UGCGUGUGCGG-CUacAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 133677 | 0.67 | 0.992096 |
Target: 5'- -aGAGga-ACGCcuGCuCGCCGcgGUCCu -3' miRNA: 3'- ggCUCauaUGCG--UGuGCGGCuaCAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 77389 | 0.68 | 0.985112 |
Target: 5'- -gGAGUcgGCcCAgACGCCGGcaagcgcucccUGUCCg -3' miRNA: 3'- ggCUCAuaUGcGUgUGCGGCU-----------ACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 82325 | 0.7 | 0.950469 |
Target: 5'- aCGAcGU-UGCGCAcCGCGgCGAUGUUCu -3' miRNA: 3'- gGCU-CAuAUGCGU-GUGCgGCUACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 16491 | 0.75 | 0.76248 |
Target: 5'- aCGAGUcacaugcgucauucgGCGCGCACGCCGAgaGUCa -3' miRNA: 3'- gGCUCAua-------------UGCGUGUGCGGCUa-CAGg -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 21565 | 0.68 | 0.981272 |
Target: 5'- uCCGAGg--ACGCcgGCGCCGAga-CCg -3' miRNA: 3'- -GGCUCauaUGCGugUGCGGCUacaGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 148303 | 0.76 | 0.696175 |
Target: 5'- aCCGcGc--GCGUGCGCGCCGGUGUUCg -3' miRNA: 3'- -GGCuCauaUGCGUGUGCGGCUACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 143290 | 0.69 | 0.961951 |
Target: 5'- aCCGAGgaagaGCAC-CGCCGAaucGUCUa -3' miRNA: 3'- -GGCUCauaugCGUGuGCGGCUa--CAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 123816 | 0.68 | 0.976735 |
Target: 5'- aCUGGGUcGUugGCGaACGCCcugGUCCa -3' miRNA: 3'- -GGCUCA-UAugCGUgUGCGGcuaCAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 63352 | 0.7 | 0.941648 |
Target: 5'- aCGAGUGUguccGCGUACGCGauucUGUCCa -3' miRNA: 3'- gGCUCAUA----UGCGUGUGCggcuACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 27929 | 0.71 | 0.931869 |
Target: 5'- aCCGcGGUGUugGCguucuGCGCGUCGGUgGUCg -3' miRNA: 3'- -GGC-UCAUAugCG-----UGUGCGGCUA-CAGg -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 158295 | 0.73 | 0.868598 |
Target: 5'- cCCGAGacUugGCGCgACGCCGAaGaCCa -3' miRNA: 3'- -GGCUCauAugCGUG-UGCGGCUaCaGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 150987 | 0.74 | 0.828644 |
Target: 5'- gCGAGUGgcgGCG-ACGgGCCGcGUGUCCg -3' miRNA: 3'- gGCUCAUa--UGCgUGUgCGGC-UACAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 162687 | 0.66 | 0.993112 |
Target: 5'- aCG-GUcgGCGCgcuGCGCGCCGgcGUUa -3' miRNA: 3'- gGCuCAuaUGCG---UGUGCGGCuaCAGg -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 45568 | 0.67 | 0.992096 |
Target: 5'- cCCGuGUcgGCGCGCACGa----GUCCc -3' miRNA: 3'- -GGCuCAuaUGCGUGUGCggcuaCAGG- -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 18525 | 0.68 | 0.985802 |
Target: 5'- aUCGGGg--GCGCcgucucccccugaggGCGCGCCGgcGUCa -3' miRNA: 3'- -GGCUCauaUGCG---------------UGUGCGGCuaCAGg -5' |
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24723 | 3' | -51.4 | NC_005264.1 | + | 24503 | 0.68 | 0.985112 |
Target: 5'- uUCGGGcgccuUGUcGCGCACGCGCC-AUGaCCa -3' miRNA: 3'- -GGCUC-----AUA-UGCGUGUGCGGcUACaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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