miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24723 5' -58.3 NC_005264.1 + 1133 0.66 0.852317
Target:  5'- uCUGAcggaCGGGCGCAcGGGaCgaUCCGGCc -3'
miRNA:   3'- -GACUa---GUCUGCGUaCCC-GgaGGGCCG- -5'
24723 5' -58.3 NC_005264.1 + 136434 0.66 0.852317
Target:  5'- uCUGAggCGGAagaGCAUGGGCgcugaggccgcgCUCagagaCGGCg -3'
miRNA:   3'- -GACUa-GUCUg--CGUACCCG------------GAGg----GCCG- -5'
24723 5' -58.3 NC_005264.1 + 120160 0.66 0.852317
Target:  5'- uCUGAcggaCGGGCGCAcGGGaCgaUCCGGCc -3'
miRNA:   3'- -GACUa---GUCUGCGUaCCC-GgaGGGCCG- -5'
24723 5' -58.3 NC_005264.1 + 120004 0.66 0.852317
Target:  5'- cCUG---GGGCgGCAggUGGGCCUCCCcccucgcggaccGGCg -3'
miRNA:   3'- -GACuagUCUG-CGU--ACCCGGAGGG------------CCG- -5'
24723 5' -58.3 NC_005264.1 + 978 0.66 0.844523
Target:  5'- cCUG---GGGCgGCAggUGGGCCUCCCccucgcggaccGGCg -3'
miRNA:   3'- -GACuagUCUG-CGU--ACCCGGAGGG-----------CCG- -5'
24723 5' -58.3 NC_005264.1 + 102738 0.66 0.828387
Target:  5'- --aGUCGcGGCGuUGUGGGCCg-CCGGCa -3'
miRNA:   3'- gacUAGU-CUGC-GUACCCGGagGGCCG- -5'
24723 5' -58.3 NC_005264.1 + 31786 0.66 0.828387
Target:  5'- ---cUCGGACGCAUucGGGUcguCUCUgGGCu -3'
miRNA:   3'- gacuAGUCUGCGUA--CCCG---GAGGgCCG- -5'
24723 5' -58.3 NC_005264.1 + 67632 0.66 0.820058
Target:  5'- ----gCGGGCGCAgGGGUgUCCUGcGCg -3'
miRNA:   3'- gacuaGUCUGCGUaCCCGgAGGGC-CG- -5'
24723 5' -58.3 NC_005264.1 + 75935 0.66 0.811566
Target:  5'- -gGAUCGGACaGCGU-GGUCUCUaucgCGGCc -3'
miRNA:   3'- gaCUAGUCUG-CGUAcCCGGAGG----GCCG- -5'
24723 5' -58.3 NC_005264.1 + 72769 0.66 0.811566
Target:  5'- uCUGGUUucuGGCGCAgaacucguaGGUCaUCCCGGCc -3'
miRNA:   3'- -GACUAGu--CUGCGUac-------CCGG-AGGGCCG- -5'
24723 5' -58.3 NC_005264.1 + 127919 0.66 0.811566
Target:  5'- cCUGAggCGGGCGCcacUGGGCCaguaaCCCuGCc -3'
miRNA:   3'- -GACUa-GUCUGCGu--ACCCGGa----GGGcCG- -5'
24723 5' -58.3 NC_005264.1 + 91403 0.67 0.785182
Target:  5'- gUGGUUGGcccuaGCGCcgGGGCa--CCGGCg -3'
miRNA:   3'- gACUAGUC-----UGCGuaCCCGgagGGCCG- -5'
24723 5' -58.3 NC_005264.1 + 21948 0.67 0.776113
Target:  5'- -cGAcUCGGGCGCAaaaGGCCagcugucauuUCCUGGCa -3'
miRNA:   3'- gaCU-AGUCUGCGUac-CCGG----------AGGGCCG- -5'
24723 5' -58.3 NC_005264.1 + 160628 0.67 0.773367
Target:  5'- -cGGUUAGgggaaacccuuagcGCGCAUGGGCg--CCGGCa -3'
miRNA:   3'- gaCUAGUC--------------UGCGUACCCGgagGGCCG- -5'
24723 5' -58.3 NC_005264.1 + 79707 0.68 0.748197
Target:  5'- aUGAgggCAGACGC----GCCUCCgCGGCc -3'
miRNA:   3'- gACUa--GUCUGCGuaccCGGAGG-GCCG- -5'
24723 5' -58.3 NC_005264.1 + 76975 0.68 0.738684
Target:  5'- gUGGUCacaAGcACGCcaucuAUGGGCCUCCCuccgGGUc -3'
miRNA:   3'- gACUAG---UC-UGCG-----UACCCGGAGGG----CCG- -5'
24723 5' -58.3 NC_005264.1 + 85919 0.68 0.738684
Target:  5'- gCUGAcUCuGAcCGCGucUGaGGCCaccgUCCCGGCa -3'
miRNA:   3'- -GACU-AGuCU-GCGU--AC-CCGG----AGGGCCG- -5'
24723 5' -58.3 NC_005264.1 + 99034 0.68 0.737728
Target:  5'- -cGAUCuaGCGCAaagcgGGGCCUCCCccgagucGGUg -3'
miRNA:   3'- gaCUAGucUGCGUa----CCCGGAGGG-------CCG- -5'
24723 5' -58.3 NC_005264.1 + 67799 0.68 0.729083
Target:  5'- -----aAGuACGCGUGGGCCUCgaCGGUc -3'
miRNA:   3'- gacuagUC-UGCGUACCCGGAGg-GCCG- -5'
24723 5' -58.3 NC_005264.1 + 87638 0.68 0.729083
Target:  5'- -cGAUgCAGcCGCGUGGGgCgcgggaCCUGGCg -3'
miRNA:   3'- gaCUA-GUCuGCGUACCCgGa-----GGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.