miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24724 3' -52.8 NC_005264.1 + 136082 1.06 0.008818
Target:  5'- gGAUACCGCCGCGUUGUCGCUAACGAUg -3'
miRNA:   3'- -CUAUGGCGGCGCAACAGCGAUUGCUA- -5'
24724 3' -52.8 NC_005264.1 + 158243 0.76 0.549886
Target:  5'- --cGCCGCCGCGg---CGCUGGCGGg -3'
miRNA:   3'- cuaUGGCGGCGCaacaGCGAUUGCUa -5'
24724 3' -52.8 NC_005264.1 + 39216 0.76 0.549886
Target:  5'- --cGCCGCCGCGg---CGCUGGCGGg -3'
miRNA:   3'- cuaUGGCGGCGCaacaGCGAUUGCUa -5'
24724 3' -52.8 NC_005264.1 + 104977 0.76 0.58083
Target:  5'- cGGUGCCGCCGUcucUGgCGCUGACGAc -3'
miRNA:   3'- -CUAUGGCGGCGca-ACaGCGAUUGCUa -5'
24724 3' -52.8 NC_005264.1 + 71825 0.74 0.664469
Target:  5'- --aGCCGcCCGCGggGUCGCgaaUAACGAc -3'
miRNA:   3'- cuaUGGC-GGCGCaaCAGCG---AUUGCUa -5'
24724 3' -52.8 NC_005264.1 + 3607 0.73 0.746292
Target:  5'- -uUACCGCCGCGggGggcCGCgagGGCGGg -3'
miRNA:   3'- cuAUGGCGGCGCaaCa--GCGa--UUGCUa -5'
24724 3' -52.8 NC_005264.1 + 122634 0.73 0.746292
Target:  5'- -uUACCGCCGCGggGggcCGCgagGGCGGg -3'
miRNA:   3'- cuAUGGCGGCGCaaCa--GCGa--UUGCUa -5'
24724 3' -52.8 NC_005264.1 + 135000 0.71 0.821409
Target:  5'- gGAUGCCGCCGCGacaGUgGC--GCGAUc -3'
miRNA:   3'- -CUAUGGCGGCGCaa-CAgCGauUGCUA- -5'
24724 3' -52.8 NC_005264.1 + 6435 0.71 0.821409
Target:  5'- ---cUCGCgGCGgcGUCGCUGGCGGa -3'
miRNA:   3'- cuauGGCGgCGCaaCAGCGAUUGCUa -5'
24724 3' -52.8 NC_005264.1 + 125462 0.71 0.821409
Target:  5'- ---cUCGCgGCGgcGUCGCUGGCGGa -3'
miRNA:   3'- cuauGGCGgCGCaaCAGCGAUUGCUa -5'
24724 3' -52.8 NC_005264.1 + 19875 0.7 0.862808
Target:  5'- cGAgagACCGCCGCGgccgCGCUAGCc-- -3'
miRNA:   3'- -CUa--UGGCGGCGCaacaGCGAUUGcua -5'
24724 3' -52.8 NC_005264.1 + 90997 0.7 0.862808
Target:  5'- --cGCCGCCGCGaacgcGUCGUUAuucGCGAc -3'
miRNA:   3'- cuaUGGCGGCGCaa---CAGCGAU---UGCUa -5'
24724 3' -52.8 NC_005264.1 + 87997 0.7 0.877891
Target:  5'- aGUGCCGCCGCuacgagaUGUCGCgUAugGGa -3'
miRNA:   3'- cUAUGGCGGCGca-----ACAGCG-AUugCUa -5'
24724 3' -52.8 NC_005264.1 + 109885 0.7 0.88509
Target:  5'- --cACCGCCGCGUaGaggCGCUGcaucgGCGAg -3'
miRNA:   3'- cuaUGGCGGCGCAaCa--GCGAU-----UGCUa -5'
24724 3' -52.8 NC_005264.1 + 138383 0.69 0.892055
Target:  5'- ---uCCGCCGCGgaacaagccaGUCGCUAugGGc -3'
miRNA:   3'- cuauGGCGGCGCaa--------CAGCGAUugCUa -5'
24724 3' -52.8 NC_005264.1 + 40743 0.69 0.911501
Target:  5'- --gGCCGCCGCca-GUCGC-GGCGAg -3'
miRNA:   3'- cuaUGGCGGCGcaaCAGCGaUUGCUa -5'
24724 3' -52.8 NC_005264.1 + 61846 0.69 0.911501
Target:  5'- ----gCGCCGCGUacggGUUGUUGGCGAa -3'
miRNA:   3'- cuaugGCGGCGCAa---CAGCGAUUGCUa -5'
24724 3' -52.8 NC_005264.1 + 55324 0.69 0.911501
Target:  5'- gGAUACuuuucaCGUgCGCGUUGUCGCUcGCGGc -3'
miRNA:   3'- -CUAUG------GCG-GCGCAACAGCGAuUGCUa -5'
24724 3' -52.8 NC_005264.1 + 159769 0.69 0.911501
Target:  5'- --gGCCGCCGCca-GUCGC-GGCGAg -3'
miRNA:   3'- cuaUGGCGGCGcaaCAGCGaUUGCUa -5'
24724 3' -52.8 NC_005264.1 + 24890 0.68 0.928718
Target:  5'- --cGCgGCCGCGaaGUCGCgcAACGAUa -3'
miRNA:   3'- cuaUGgCGGCGCaaCAGCGa-UUGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.