Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24724 | 3' | -52.8 | NC_005264.1 | + | 159769 | 0.69 | 0.911501 |
Target: 5'- --gGCCGCCGCca-GUCGC-GGCGAg -3' miRNA: 3'- cuaUGGCGGCGcaaCAGCGaUUGCUa -5' |
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24724 | 3' | -52.8 | NC_005264.1 | + | 136082 | 1.06 | 0.008818 |
Target: 5'- gGAUACCGCCGCGUUGUCGCUAACGAUg -3' miRNA: 3'- -CUAUGGCGGCGCAACAGCGAUUGCUA- -5' |
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24724 | 3' | -52.8 | NC_005264.1 | + | 158243 | 0.76 | 0.549886 |
Target: 5'- --cGCCGCCGCGg---CGCUGGCGGg -3' miRNA: 3'- cuaUGGCGGCGCaacaGCGAUUGCUa -5' |
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24724 | 3' | -52.8 | NC_005264.1 | + | 104977 | 0.76 | 0.58083 |
Target: 5'- cGGUGCCGCCGUcucUGgCGCUGACGAc -3' miRNA: 3'- -CUAUGGCGGCGca-ACaGCGAUUGCUa -5' |
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24724 | 3' | -52.8 | NC_005264.1 | + | 71825 | 0.74 | 0.664469 |
Target: 5'- --aGCCGcCCGCGggGUCGCgaaUAACGAc -3' miRNA: 3'- cuaUGGC-GGCGCaaCAGCG---AUUGCUa -5' |
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24724 | 3' | -52.8 | NC_005264.1 | + | 122634 | 0.73 | 0.746292 |
Target: 5'- -uUACCGCCGCGggGggcCGCgagGGCGGg -3' miRNA: 3'- cuAUGGCGGCGCaaCa--GCGa--UUGCUa -5' |
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24724 | 3' | -52.8 | NC_005264.1 | + | 125462 | 0.71 | 0.821409 |
Target: 5'- ---cUCGCgGCGgcGUCGCUGGCGGa -3' miRNA: 3'- cuauGGCGgCGCaaCAGCGAUUGCUa -5' |
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24724 | 3' | -52.8 | NC_005264.1 | + | 19875 | 0.7 | 0.862808 |
Target: 5'- cGAgagACCGCCGCGgccgCGCUAGCc-- -3' miRNA: 3'- -CUa--UGGCGGCGCaacaGCGAUUGcua -5' |
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24724 | 3' | -52.8 | NC_005264.1 | + | 109885 | 0.7 | 0.88509 |
Target: 5'- --cACCGCCGCGUaGaggCGCUGcaucgGCGAg -3' miRNA: 3'- cuaUGGCGGCGCAaCa--GCGAU-----UGCUa -5' |
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24724 | 3' | -52.8 | NC_005264.1 | + | 33966 | 0.66 | 0.973033 |
Target: 5'- cGGUGCCGCaa-GcUGUcCGCUGGCGAc -3' miRNA: 3'- -CUAUGGCGgcgCaACA-GCGAUUGCUa -5' |
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24724 | 3' | -52.8 | NC_005264.1 | + | 7427 | 0.67 | 0.963744 |
Target: 5'- cGUG-CGCCGgGUgGUCGCUAuCGAUg -3' miRNA: 3'- cUAUgGCGGCgCAaCAGCGAUuGCUA- -5' |
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24724 | 3' | -52.8 | NC_005264.1 | + | 159310 | 0.67 | 0.956432 |
Target: 5'- --cGCCGCCGCG---UCGCgguucGACGAg -3' miRNA: 3'- cuaUGGCGGCGCaacAGCGa----UUGCUa -5' |
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24724 | 3' | -52.8 | NC_005264.1 | + | 55324 | 0.69 | 0.911501 |
Target: 5'- gGAUACuuuucaCGUgCGCGUUGUCGCUcGCGGc -3' miRNA: 3'- -CUAUG------GCG-GCGCAACAGCGAuUGCUa -5' |
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24724 | 3' | -52.8 | NC_005264.1 | + | 34760 | 0.67 | 0.963744 |
Target: 5'- ---gUCGCCGC--UGUCGCUAcACGAa -3' miRNA: 3'- cuauGGCGGCGcaACAGCGAU-UGCUa -5' |
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24724 | 3' | -52.8 | NC_005264.1 | + | 61846 | 0.69 | 0.911501 |
Target: 5'- ----gCGCCGCGUacggGUUGUUGGCGAa -3' miRNA: 3'- cuaugGCGGCGCAa---CAGCGAUUGCUa -5' |
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24724 | 3' | -52.8 | NC_005264.1 | + | 35011 | 0.67 | 0.948175 |
Target: 5'- --gGCCGCCGCGgaGgcaaCGCUGuCGGg -3' miRNA: 3'- cuaUGGCGGCGCaaCa---GCGAUuGCUa -5' |
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24724 | 3' | -52.8 | NC_005264.1 | + | 106910 | 0.66 | 0.973033 |
Target: 5'- -cUACUGCCGCG-----GCUGACGAUa -3' miRNA: 3'- cuAUGGCGGCGCaacagCGAUUGCUA- -5' |
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24724 | 3' | -52.8 | NC_005264.1 | + | 88591 | 0.66 | 0.979117 |
Target: 5'- -cUACCGCCGUGUcUGgagcgcggccagcgCGCUAcguGCGAg -3' miRNA: 3'- cuAUGGCGGCGCA-ACa-------------GCGAU---UGCUa -5' |
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24724 | 3' | -52.8 | NC_005264.1 | + | 7953 | 0.68 | 0.938944 |
Target: 5'- --gGCCGCgGCGUcuuUGUCGCUGccuaGAg -3' miRNA: 3'- cuaUGGCGgCGCA---ACAGCGAUug--CUa -5' |
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24724 | 3' | -52.8 | NC_005264.1 | + | 23218 | 0.68 | 0.938944 |
Target: 5'- cGUGCCGCCGCGcgaGUUGUUGgauuacguguguGCGAa -3' miRNA: 3'- cUAUGGCGGCGCaa-CAGCGAU------------UGCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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