Results 21 - 40 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24724 | 5' | -54.9 | NC_005264.1 | + | 25946 | 0.72 | 0.704849 |
Target: 5'- gCGACGAAgaugagGACGGCGCGGacGuGUGCAc -3' miRNA: 3'- -GCUGCUUa-----UUGCUGCGCCc-CuCGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 35962 | 0.72 | 0.724613 |
Target: 5'- cCGACG-AUGGCGAuuCGCcuggaGGGGGCGCGg -3' miRNA: 3'- -GCUGCuUAUUGCU--GCGc----CCCUCGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 131598 | 0.71 | 0.734382 |
Target: 5'- uGugGAGggAGCGGCGCGcguGGGcGCGCGc -3' miRNA: 3'- gCugCUUa-UUGCUGCGC---CCCuCGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 6465 | 0.71 | 0.734382 |
Target: 5'- uCGGCGGcgcGGCGaACGuCGGGGuGCGCGg -3' miRNA: 3'- -GCUGCUua-UUGC-UGC-GCCCCuCGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 125492 | 0.71 | 0.734382 |
Target: 5'- uCGGCGGcgcGGCGaACGuCGGGGuGCGCGg -3' miRNA: 3'- -GCUGCUua-UUGC-UGC-GCCCCuCGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 122753 | 0.71 | 0.741169 |
Target: 5'- gCGACGAGgaaGACGACgaggaGCGGGGccucuugccgccggGGCGCu -3' miRNA: 3'- -GCUGCUUa--UUGCUG-----CGCCCC--------------UCGCGu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 31959 | 0.71 | 0.753648 |
Target: 5'- -cGCGAGUGGCGGCGaCGGGccGCGUg -3' miRNA: 3'- gcUGCUUAUUGCUGC-GCCCcuCGCGu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 150986 | 0.71 | 0.753648 |
Target: 5'- -cGCGAGUGGCGGCGaCGGGccGCGUg -3' miRNA: 3'- gcUGCUUAUUGCUGC-GCCCcuCGCGu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 55549 | 0.71 | 0.781733 |
Target: 5'- gCGACGGaaGUAcUGGaGgGGGGAGCGCGg -3' miRNA: 3'- -GCUGCU--UAUuGCUgCgCCCCUCGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 161305 | 0.71 | 0.781733 |
Target: 5'- cCGGCGcGGUcAACGcCGCGGGGccccaaaaaacGGCGCAg -3' miRNA: 3'- -GCUGC-UUA-UUGCuGCGCCCC-----------UCGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 42278 | 0.71 | 0.781733 |
Target: 5'- cCGGCGcGGUcAACGcCGCGGGGccccaaaaaacGGCGCAg -3' miRNA: 3'- -GCUGC-UUA-UUGCuGCGCCCC-----------UCGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 151859 | 0.71 | 0.781733 |
Target: 5'- cCGGCGGc-GAC-ACGUGGGGGGCGUc -3' miRNA: 3'- -GCUGCUuaUUGcUGCGCCCCUCGCGu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 157692 | 0.71 | 0.781733 |
Target: 5'- gGACGAu--GCGGCGCGGcc-GCGCAu -3' miRNA: 3'- gCUGCUuauUGCUGCGCCccuCGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 16562 | 0.7 | 0.79981 |
Target: 5'- -cGCGGugGGCGGCGcCGGGGcggcGGCGCAc -3' miRNA: 3'- gcUGCUuaUUGCUGC-GCCCC----UCGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 43874 | 0.7 | 0.808628 |
Target: 5'- aGACGGA--ACGAgCGCGgcaaaGGGGGCGCc -3' miRNA: 3'- gCUGCUUauUGCU-GCGC-----CCCUCGCGu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 18626 | 0.7 | 0.808628 |
Target: 5'- -uGCGAaaGUGACGugGUGGGGuGcCGCc -3' miRNA: 3'- gcUGCU--UAUUGCugCGCCCCuC-GCGu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 39387 | 0.7 | 0.81643 |
Target: 5'- aGACG-AUGACGACGUcggcgaaGGGGGcacuGCGCu -3' miRNA: 3'- gCUGCuUAUUGCUGCG-------CCCCU----CGCGu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 158414 | 0.7 | 0.81643 |
Target: 5'- aGACG-AUGACGACGUcggcgaaGGGGGcacuGCGCu -3' miRNA: 3'- gCUGCuUAUUGCUGCG-------CCCCU----CGCGu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 43680 | 0.7 | 0.817289 |
Target: 5'- cCGGCGuuaaGGCGGcCGcCGGGGAGCGgGa -3' miRNA: 3'- -GCUGCuua-UUGCU-GC-GCCCCUCGCgU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 162706 | 0.7 | 0.817289 |
Target: 5'- cCGGCGuuaaGGCGGcCGcCGGGGAGCGgGa -3' miRNA: 3'- -GCUGCuua-UUGCU-GC-GCCCCUCGCgU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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