miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24724 5' -54.9 NC_005264.1 + 136117 1.09 0.004348
Target:  5'- aCGACGAAUAACGACGCGGGGAGCGCAu -3'
miRNA:   3'- -GCUGCUUAUUGCUGCGCCCCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 20458 0.8 0.317836
Target:  5'- cCGGCGGAcAGCGGCGCGcauGGGAGgGCAu -3'
miRNA:   3'- -GCUGCUUaUUGCUGCGC---CCCUCgCGU- -5'
24724 5' -54.9 NC_005264.1 + 114292 0.77 0.413044
Target:  5'- aCGACGAA-GGCGACG-GGGGcGCGCGg -3'
miRNA:   3'- -GCUGCUUaUUGCUGCgCCCCuCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 109618 0.76 0.485504
Target:  5'- -aGCaAAUGGCGugGgCGGGGGGCGCGa -3'
miRNA:   3'- gcUGcUUAUUGCugC-GCCCCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 49598 0.76 0.494991
Target:  5'- cCGGCGAcc-AgGACGaCGGGGGGCGCu -3'
miRNA:   3'- -GCUGCUuauUgCUGC-GCCCCUCGCGu -5'
24724 5' -54.9 NC_005264.1 + 121554 0.75 0.553506
Target:  5'- gCGugGAAgu-CGACGCGGGcGGGcCGCu -3'
miRNA:   3'- -GCugCUUauuGCUGCGCCC-CUC-GCGu -5'
24724 5' -54.9 NC_005264.1 + 34013 0.75 0.563476
Target:  5'- aGACG-AUGACGACGCGGGG-GUa-- -3'
miRNA:   3'- gCUGCuUAUUGCUGCGCCCCuCGcgu -5'
24724 5' -54.9 NC_005264.1 + 122194 0.73 0.624062
Target:  5'- aCGGCGAcccuccgcGUcgcGACGGCGCGGGGaAGgGCu -3'
miRNA:   3'- -GCUGCU--------UA---UUGCUGCGCCCC-UCgCGu -5'
24724 5' -54.9 NC_005264.1 + 3167 0.73 0.624062
Target:  5'- aCGGCGAcccuccgcGUcgcGACGGCGCGGGGaAGgGCu -3'
miRNA:   3'- -GCUGCU--------UA---UUGCUGCGCCCC-UCgCGu -5'
24724 5' -54.9 NC_005264.1 + 25909 0.73 0.634223
Target:  5'- aGGCGAAca--GAUgGCGGGGGGCGCu -3'
miRNA:   3'- gCUGCUUauugCUG-CGCCCCUCGCGu -5'
24724 5' -54.9 NC_005264.1 + 96875 0.73 0.651489
Target:  5'- gGACGAGUAuugaagauggcaugGCGGCGCGcGaGGGCGCGg -3'
miRNA:   3'- gCUGCUUAU--------------UGCUGCGCcC-CUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 160080 0.73 0.654532
Target:  5'- aGACGGu--ACGGCGCcgGGGGAcGCGCc -3'
miRNA:   3'- gCUGCUuauUGCUGCG--CCCCU-CGCGu -5'
24724 5' -54.9 NC_005264.1 + 41053 0.73 0.654532
Target:  5'- aGACGGu--ACGGCGCcgGGGGAcGCGCc -3'
miRNA:   3'- gCUGCUuauUGCUGCG--CCCCU-CGCGu -5'
24724 5' -54.9 NC_005264.1 + 40782 0.73 0.664664
Target:  5'- aGACGc--AGCGGCgcugcaaacuGCGGGGGGCGCu -3'
miRNA:   3'- gCUGCuuaUUGCUG----------CGCCCCUCGCGu -5'
24724 5' -54.9 NC_005264.1 + 159808 0.73 0.664664
Target:  5'- aGACGc--AGCGGCgcugcaaacuGCGGGGGGCGCu -3'
miRNA:   3'- gCUGCuuaUUGCUG----------CGCCCCUCGCGu -5'
24724 5' -54.9 NC_005264.1 + 2881 0.73 0.674771
Target:  5'- uCGAcCGGGgcGCGGCgcgGCGGGGAGgGCGa -3'
miRNA:   3'- -GCU-GCUUauUGCUG---CGCCCCUCgCGU- -5'
24724 5' -54.9 NC_005264.1 + 121907 0.73 0.674771
Target:  5'- uCGAcCGGGgcGCGGCgcgGCGGGGAGgGCGa -3'
miRNA:   3'- -GCU-GCUUauUGCUG---CGCCCCUCgCGU- -5'
24724 5' -54.9 NC_005264.1 + 25618 0.72 0.684843
Target:  5'- aGACGAagAUGAUGACGCGGuuaagcuuaGGGGCGa- -3'
miRNA:   3'- gCUGCU--UAUUGCUGCGCC---------CCUCGCgu -5'
24724 5' -54.9 NC_005264.1 + 74895 0.72 0.68886
Target:  5'- uCGACGAucguGCGAuuCGCguagaagccauuuacGGGGAGCGCGu -3'
miRNA:   3'- -GCUGCUuau-UGCU--GCG---------------CCCCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 145863 0.72 0.704849
Target:  5'- cCGGCGGAguuuGCGaACGgGGGuGGGUGCAa -3'
miRNA:   3'- -GCUGCUUau--UGC-UGCgCCC-CUCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.