miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24724 5' -54.9 NC_005264.1 + 2499 0.69 0.834105
Target:  5'- uCGGCGGGccucGCGcgacuucaGCGCGGGGGGCGa- -3'
miRNA:   3'- -GCUGCUUau--UGC--------UGCGCCCCUCGCgu -5'
24724 5' -54.9 NC_005264.1 + 2881 0.73 0.674771
Target:  5'- uCGAcCGGGgcGCGGCgcgGCGGGGAGgGCGa -3'
miRNA:   3'- -GCU-GCUUauUGCUG---CGCCCCUCgCGU- -5'
24724 5' -54.9 NC_005264.1 + 3167 0.73 0.624062
Target:  5'- aCGGCGAcccuccgcGUcgcGACGGCGCGGGGaAGgGCu -3'
miRNA:   3'- -GCUGCU--------UA---UUGCUGCGCCCC-UCgCGu -5'
24724 5' -54.9 NC_005264.1 + 3381 0.68 0.879994
Target:  5'- gCGGCGAGggcuucucCGgaACGCGGGGucgguGCGCGg -3'
miRNA:   3'- -GCUGCUUauu-----GC--UGCGCCCCu----CGCGU- -5'
24724 5' -54.9 NC_005264.1 + 3599 0.69 0.872858
Target:  5'- gCGAaGAAUuacCGcCGCGGGGGGcCGCGa -3'
miRNA:   3'- -GCUgCUUAuu-GCuGCGCCCCUC-GCGU- -5'
24724 5' -54.9 NC_005264.1 + 3669 0.67 0.918112
Target:  5'- gGGCGAcUGGCauuGGUGCGGGGccuGGCGCGg -3'
miRNA:   3'- gCUGCUuAUUG---CUGCGCCCC---UCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 3728 0.7 0.823253
Target:  5'- gGACGAGgaaGACGACgaggaGCGGGGccucuugccgccggGGCGCu -3'
miRNA:   3'- gCUGCUUa--UUGCUG-----CGCCCC--------------UCGCGu -5'
24724 5' -54.9 NC_005264.1 + 5268 0.69 0.842245
Target:  5'- aGGCGAGUcGCGGCcggacgGCGGGGcGGCGg- -3'
miRNA:   3'- gCUGCUUAuUGCUG------CGCCCC-UCGCgu -5'
24724 5' -54.9 NC_005264.1 + 6465 0.71 0.734382
Target:  5'- uCGGCGGcgcGGCGaACGuCGGGGuGCGCGg -3'
miRNA:   3'- -GCUGCUua-UUGC-UGC-GCCCCuCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 6978 0.67 0.927394
Target:  5'- uGAUGAG-AGUGGCGCGGGGuugucccugcgggcGGCGCc -3'
miRNA:   3'- gCUGCUUaUUGCUGCGCCCC--------------UCGCGu -5'
24724 5' -54.9 NC_005264.1 + 10962 0.66 0.951983
Target:  5'- cCGACG-AUGACGAaGCaGGGGGCu-- -3'
miRNA:   3'- -GCUGCuUAUUGCUgCGcCCCUCGcgu -5'
24724 5' -54.9 NC_005264.1 + 13964 0.68 0.879994
Target:  5'- gCGACGAGgagacgAGCGAgaCGCGGGGu-CGCc -3'
miRNA:   3'- -GCUGCUUa-----UUGCU--GCGCCCCucGCGu -5'
24724 5' -54.9 NC_005264.1 + 16562 0.7 0.79981
Target:  5'- -cGCGGugGGCGGCGcCGGGGcggcGGCGCAc -3'
miRNA:   3'- gcUGCUuaUUGCUGC-GCCCC----UCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 17276 0.66 0.955897
Target:  5'- -aACGGA-GGCGACGgGGcGGAGgGCu -3'
miRNA:   3'- gcUGCUUaUUGCUGCgCC-CCUCgCGu -5'
24724 5' -54.9 NC_005264.1 + 18626 0.7 0.808628
Target:  5'- -uGCGAaaGUGACGugGUGGGGuGcCGCc -3'
miRNA:   3'- gcUGCU--UAUUGCugCGCCCCuC-GCGu -5'
24724 5' -54.9 NC_005264.1 + 19427 0.69 0.857953
Target:  5'- gCGcCGggUGugGcCGCGGGGcGCGgGu -3'
miRNA:   3'- -GCuGCuuAUugCuGCGCCCCuCGCgU- -5'
24724 5' -54.9 NC_005264.1 + 20243 0.67 0.928962
Target:  5'- uGACGggUGggcagggguuGCGGCGCggccucgcggaGGGGAccgucuGCGCGc -3'
miRNA:   3'- gCUGCuuAU----------UGCUGCG-----------CCCCU------CGCGU- -5'
24724 5' -54.9 NC_005264.1 + 20458 0.8 0.317836
Target:  5'- cCGGCGGAcAGCGGCGCGcauGGGAGgGCAu -3'
miRNA:   3'- -GCUGCUUaUUGCUGCGC---CCCUCgCGU- -5'
24724 5' -54.9 NC_005264.1 + 22754 0.69 0.872858
Target:  5'- gGGCGAagcgAUAGCGGCGgGcaaugaGGGGCGCGg -3'
miRNA:   3'- gCUGCU----UAUUGCUGCgCc-----CCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 25618 0.72 0.684843
Target:  5'- aGACGAagAUGAUGACGCGGuuaagcuuaGGGGCGa- -3'
miRNA:   3'- gCUGCU--UAUUGCUGCGCC---------CCUCGCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.