Results 1 - 20 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24724 | 5' | -54.9 | NC_005264.1 | + | 98100 | 0.66 | 0.955897 |
Target: 5'- gGGCGAuccuu-GCGCGGGGcacGGCGCc -3' miRNA: 3'- gCUGCUuauugcUGCGCCCC---UCGCGu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 51404 | 0.66 | 0.943472 |
Target: 5'- -cACGAaguacAUGGCGuACGcCGGGGAGcCGCc -3' miRNA: 3'- gcUGCU-----UAUUGC-UGC-GCCCCUC-GCGu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 17276 | 0.66 | 0.955897 |
Target: 5'- -aACGGA-GGCGACGgGGcGGAGgGCu -3' miRNA: 3'- gcUGCUUaUUGCUGCgCC-CCUCgCGu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 54250 | 0.66 | 0.955897 |
Target: 5'- aGGCugcuagAGCGcCGCaGGGAGCGCu -3' miRNA: 3'- gCUGcuua--UUGCuGCGcCCCUCGCGu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 113368 | 0.66 | 0.943472 |
Target: 5'- cCGuCGAAU-ACGGCGCGGGucaGGGUuauGCAg -3' miRNA: 3'- -GCuGCUUAuUGCUGCGCCC---CUCG---CGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 10962 | 0.66 | 0.951983 |
Target: 5'- cCGACG-AUGACGAaGCaGGGGGCu-- -3' miRNA: 3'- -GCUGCuUAUUGCUgCGcCCCUCGcgu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 87580 | 0.66 | 0.951983 |
Target: 5'- cCGACGAGgacgaacACGGCGCGuGGucGCGUu -3' miRNA: 3'- -GCUGCUUau-----UGCUGCGC-CCcuCGCGu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 88238 | 0.66 | 0.951983 |
Target: 5'- aCGugGggUca-GGCGCGGGGucauCGUAg -3' miRNA: 3'- -GCugCuuAuugCUGCGCCCCuc--GCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 132920 | 0.66 | 0.951983 |
Target: 5'- gCGGCGuaccucccUAGCGcCGaCGGGGuAGCGCc -3' miRNA: 3'- -GCUGCuu------AUUGCuGC-GCCCC-UCGCGu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 6978 | 0.67 | 0.927394 |
Target: 5'- uGAUGAG-AGUGGCGCGGGGuugucccugcgggcGGCGCc -3' miRNA: 3'- gCUGCUUaUUGCUGCGCCCC--------------UCGCGu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 3669 | 0.67 | 0.918112 |
Target: 5'- gGGCGAcUGGCauuGGUGCGGGGccuGGCGCGg -3' miRNA: 3'- gCUGCUuAUUG---CUGCGCCCC---UCGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 143602 | 0.67 | 0.912334 |
Target: 5'- -aACGAG-AAUGGCGCGGGGuacAGCGa- -3' miRNA: 3'- gcUGCUUaUUGCUGCGCCCC---UCGCgu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 67002 | 0.67 | 0.912334 |
Target: 5'- aCGGCGAGUgcugccugGACGGaGCGGcGGccuuGCGCAg -3' miRNA: 3'- -GCUGCUUA--------UUGCUgCGCC-CCu---CGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 71840 | 0.67 | 0.912334 |
Target: 5'- -cGCGAAUAACGACGCGucgcGGcGGCGg- -3' miRNA: 3'- gcUGCUUAUUGCUGCGC----CCcUCGCgu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 100842 | 0.67 | 0.912334 |
Target: 5'- aCGGCGAGUucucccuCGACGCauGGGAccagGCGCGc -3' miRNA: 3'- -GCUGCUUAuu-----GCUGCGc-CCCU----CGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 66690 | 0.67 | 0.918112 |
Target: 5'- cCGGCGc----CGG-GCGGGGGGCGUAc -3' miRNA: 3'- -GCUGCuuauuGCUgCGCCCCUCGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 120742 | 0.67 | 0.923111 |
Target: 5'- cCGGCGAcu-GCGACGaCaGGGAuaucccgGCGCAg -3' miRNA: 3'- -GCUGCUuauUGCUGC-GcCCCU-------CGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 100612 | 0.67 | 0.923655 |
Target: 5'- cCGACGAccccgaAGCGGC-CGcGGAGCGCGc -3' miRNA: 3'- -GCUGCUua----UUGCUGcGCcCCUCGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 32079 | 0.67 | 0.928962 |
Target: 5'- -uGCGAAag-UGACGUaGGGGGGCGCc -3' miRNA: 3'- gcUGCUUauuGCUGCG-CCCCUCGCGu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 133772 | 0.67 | 0.934033 |
Target: 5'- cCGACGAAgagcggcaGAUGACGauGGGGGC-CAa -3' miRNA: 3'- -GCUGCUUa-------UUGCUGCgcCCCUCGcGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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