miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24724 5' -54.9 NC_005264.1 + 25909 0.73 0.634223
Target:  5'- aGGCGAAca--GAUgGCGGGGGGCGCu -3'
miRNA:   3'- gCUGCUUauugCUG-CGCCCCUCGCGu -5'
24724 5' -54.9 NC_005264.1 + 25946 0.72 0.704849
Target:  5'- gCGACGAAgaugagGACGGCGCGGacGuGUGCAc -3'
miRNA:   3'- -GCUGCUUa-----UUGCUGCGCCc-CuCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 27704 0.69 0.865509
Target:  5'- uGACGAcgGAUGuCGCGGGGcauaauucGGCGa- -3'
miRNA:   3'- gCUGCUuaUUGCuGCGCCCC--------UCGCgu -5'
24724 5' -54.9 NC_005264.1 + 28042 0.67 0.934033
Target:  5'- cCGGCGcgc-GCGACGCcGGGuaaaAGCGCGc -3'
miRNA:   3'- -GCUGCuuauUGCUGCGcCCC----UCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 30103 0.69 0.857953
Target:  5'- -cGCGAGUcgaGAUGCGGGcGGCGCGg -3'
miRNA:   3'- gcUGCUUAuugCUGCGCCCcUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 31500 0.67 0.928962
Target:  5'- aCGAgGAAggucaGGCGGCuccaggcucggGCGGGGAGgGCc -3'
miRNA:   3'- -GCUgCUUa----UUGCUG-----------CGCCCCUCgCGu -5'
24724 5' -54.9 NC_005264.1 + 31959 0.71 0.753648
Target:  5'- -cGCGAGUGGCGGCGaCGGGccGCGUg -3'
miRNA:   3'- gcUGCUUAUUGCUGC-GCCCcuCGCGu -5'
24724 5' -54.9 NC_005264.1 + 32079 0.67 0.928962
Target:  5'- -uGCGAAag-UGACGUaGGGGGGCGCc -3'
miRNA:   3'- gcUGCUUauuGCUGCG-CCCCUCGCGu -5'
24724 5' -54.9 NC_005264.1 + 34013 0.75 0.563476
Target:  5'- aGACG-AUGACGACGCGGGG-GUa-- -3'
miRNA:   3'- gCUGCuUAUUGCUGCGCCCCuCGcgu -5'
24724 5' -54.9 NC_005264.1 + 34245 0.68 0.879994
Target:  5'- aGACGAacccggcuucuGUAGCGagGCGCGGGcGAcGCGUc -3'
miRNA:   3'- gCUGCU-----------UAUUGC--UGCGCCC-CU-CGCGu -5'
24724 5' -54.9 NC_005264.1 + 35766 0.67 0.928962
Target:  5'- gCGACGuggGUGAaGAgGCGGaGGGCGCGg -3'
miRNA:   3'- -GCUGCu--UAUUgCUgCGCCcCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 35962 0.72 0.724613
Target:  5'- cCGACG-AUGGCGAuuCGCcuggaGGGGGCGCGg -3'
miRNA:   3'- -GCUGCuUAUUGCU--GCGc----CCCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 39387 0.7 0.81643
Target:  5'- aGACG-AUGACGACGUcggcgaaGGGGGcacuGCGCu -3'
miRNA:   3'- gCUGCuUAUUGCUGCG-------CCCCU----CGCGu -5'
24724 5' -54.9 NC_005264.1 + 40782 0.73 0.664664
Target:  5'- aGACGc--AGCGGCgcugcaaacuGCGGGGGGCGCu -3'
miRNA:   3'- gCUGCuuaUUGCUG----------CGCCCCUCGCGu -5'
24724 5' -54.9 NC_005264.1 + 41053 0.73 0.654532
Target:  5'- aGACGGu--ACGGCGCcgGGGGAcGCGCc -3'
miRNA:   3'- gCUGCUuauUGCUGCG--CCCCU-CGCGu -5'
24724 5' -54.9 NC_005264.1 + 42278 0.71 0.781733
Target:  5'- cCGGCGcGGUcAACGcCGCGGGGccccaaaaaacGGCGCAg -3'
miRNA:   3'- -GCUGC-UUA-UUGCuGCGCCCC-----------UCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 42380 0.67 0.928962
Target:  5'- gCGAucuuCGAGgcGACGugGCGGuGGAaauGCGCGa -3'
miRNA:   3'- -GCU----GCUUa-UUGCugCGCC-CCU---CGCGU- -5'
24724 5' -54.9 NC_005264.1 + 43146 0.69 0.857953
Target:  5'- aGcACGggUGgaGCGGggaGgGGGGGGCGCGu -3'
miRNA:   3'- gC-UGCuuAU--UGCUg--CgCCCCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 43680 0.7 0.817289
Target:  5'- cCGGCGuuaaGGCGGcCGcCGGGGAGCGgGa -3'
miRNA:   3'- -GCUGCuua-UUGCU-GC-GCCCCUCGCgU- -5'
24724 5' -54.9 NC_005264.1 + 43874 0.7 0.808628
Target:  5'- aGACGGA--ACGAgCGCGgcaaaGGGGGCGCc -3'
miRNA:   3'- gCUGCUUauUGCU-GCGC-----CCCUCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.