miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24725 3' -55.9 NC_005264.1 + 88243 0.67 0.897974
Target:  5'- uACGCaGaCCaGAUACUGUuuGCCCG-CcGCCu -3'
miRNA:   3'- -UGCG-C-GG-CUAUGACA--UGGGCaGaCGG- -5'
24725 3' -55.9 NC_005264.1 + 68255 0.69 0.797199
Target:  5'- cCGCGCCGcggGCg--GCCUGcugCUGCCg -3'
miRNA:   3'- uGCGCGGCua-UGacaUGGGCa--GACGG- -5'
24725 3' -55.9 NC_005264.1 + 73368 0.66 0.937207
Target:  5'- gACGCG-CGGUGCUuuugGCgCGgcUCUGCCa -3'
miRNA:   3'- -UGCGCgGCUAUGAca--UGgGC--AGACGG- -5'
24725 3' -55.9 NC_005264.1 + 96075 0.66 0.932303
Target:  5'- uCGCGCgGc--CUGUAUCCGUUgcggcuacuguUGCCg -3'
miRNA:   3'- uGCGCGgCuauGACAUGGGCAG-----------ACGG- -5'
24725 3' -55.9 NC_005264.1 + 123139 0.66 0.910346
Target:  5'- -gGgGCCGAgGgUGU-CCCcUCUGCCa -3'
miRNA:   3'- ugCgCGGCUaUgACAuGGGcAGACGG- -5'
24725 3' -55.9 NC_005264.1 + 161392 0.69 0.779092
Target:  5'- gGCGaugGCCGGUGCUGgcuCCCG-CggagGCCc -3'
miRNA:   3'- -UGCg--CGGCUAUGACau-GGGCaGa---CGG- -5'
24725 3' -55.9 NC_005264.1 + 105742 0.66 0.927165
Target:  5'- cGCGCGaagcaaCGGUAUUugGCCCGUCguggaaGCCc -3'
miRNA:   3'- -UGCGCg-----GCUAUGAcaUGGGCAGa-----CGG- -5'
24725 3' -55.9 NC_005264.1 + 154531 0.69 0.779092
Target:  5'- gGCGaCGCCGcgGCgcagGUGCCCccGUC-GCCc -3'
miRNA:   3'- -UGC-GCGGCuaUGa---CAUGGG--CAGaCGG- -5'
24725 3' -55.9 NC_005264.1 + 152974 0.7 0.769841
Target:  5'- gGCGCGCCGggACcGcGCCCGauagggGCCg -3'
miRNA:   3'- -UGCGCGGCuaUGaCaUGGGCaga---CGG- -5'
24725 3' -55.9 NC_005264.1 + 51095 0.66 0.910346
Target:  5'- cGCGguCGCCGGUGCUG---CgGUCUGCUc -3'
miRNA:   3'- -UGC--GCGGCUAUGACaugGgCAGACGG- -5'
24725 3' -55.9 NC_005264.1 + 17732 0.66 0.937207
Target:  5'- uGCGCGCCGcgGCgcaACCUa--UGCCa -3'
miRNA:   3'- -UGCGCGGCuaUGacaUGGGcagACGG- -5'
24725 3' -55.9 NC_005264.1 + 23420 0.67 0.870542
Target:  5'- cACGCGUaCGccaGCgGUGCCCGUCucgagUGCCc -3'
miRNA:   3'- -UGCGCG-GCua-UGaCAUGGGCAG-----ACGG- -5'
24725 3' -55.9 NC_005264.1 + 130866 0.68 0.831593
Target:  5'- aGCGCGCaucgGAcACgcgGCCCGUCgccGCCa -3'
miRNA:   3'- -UGCGCGg---CUaUGacaUGGGCAGa--CGG- -5'
24725 3' -55.9 NC_005264.1 + 393 0.66 0.921792
Target:  5'- -aGCGCCGGcGCggucgUGUACCUGUUcGCg -3'
miRNA:   3'- ugCGCGGCUaUG-----ACAUGGGCAGaCGg -5'
24725 3' -55.9 NC_005264.1 + 132214 0.66 0.932303
Target:  5'- uACGCGCUGcgcGCgg-AUCCGUCgccGCCg -3'
miRNA:   3'- -UGCGCGGCua-UGacaUGGGCAGa--CGG- -5'
24725 3' -55.9 NC_005264.1 + 42654 0.67 0.873441
Target:  5'- cGCGCGCCGGcagACUGgcggccggaucguCCCGUgcGCCc -3'
miRNA:   3'- -UGCGCGGCUa--UGACau-----------GGGCAgaCGG- -5'
24725 3' -55.9 NC_005264.1 + 113485 0.67 0.877727
Target:  5'- uACGCGCCGAU-CU-UGCCgCGUUccuccggGCCg -3'
miRNA:   3'- -UGCGCGGCUAuGAcAUGG-GCAGa------CGG- -5'
24725 3' -55.9 NC_005264.1 + 33947 0.7 0.769841
Target:  5'- gGCGCGCCGggACcGcGCCCGauagggGCCg -3'
miRNA:   3'- -UGCGCGGCuaUGaCaUGGGCaga---CGG- -5'
24725 3' -55.9 NC_005264.1 + 35504 0.69 0.779092
Target:  5'- gGCGaCGCCGcgGCgcagGUGCCCccGUC-GCCc -3'
miRNA:   3'- -UGC-GCGGCuaUGa---CAUGGG--CAGaCGG- -5'
24725 3' -55.9 NC_005264.1 + 145378 0.7 0.769841
Target:  5'- gACGCGCU--UACUGUGaaaCCGUacagaCUGCCc -3'
miRNA:   3'- -UGCGCGGcuAUGACAUg--GGCA-----GACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.