miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24725 3' -55.9 NC_005264.1 + 136842 1.12 0.002145
Target:  5'- cACGCGCCGAUACUGUACCCGUCUGCCg -3'
miRNA:   3'- -UGCGCGGCUAUGACAUGGGCAGACGG- -5'
24725 3' -55.9 NC_005264.1 + 61264 0.67 0.897974
Target:  5'- gGCGCGCCucgGC-GUACCCGUauuCCa -3'
miRNA:   3'- -UGCGCGGcuaUGaCAUGGGCAgacGG- -5'
24725 3' -55.9 NC_005264.1 + 123139 0.66 0.910346
Target:  5'- -gGgGCCGAgGgUGU-CCCcUCUGCCa -3'
miRNA:   3'- ugCgCGGCUaUgACAuGGGcAGACGG- -5'
24725 3' -55.9 NC_005264.1 + 73368 0.66 0.937207
Target:  5'- gACGCG-CGGUGCUuuugGCgCGgcUCUGCCa -3'
miRNA:   3'- -UGCGCgGCUAUGAca--UGgGC--AGACGG- -5'
24725 3' -55.9 NC_005264.1 + 12147 0.7 0.76047
Target:  5'- gGCGCuGCCcguUGCUGggguCUCGUCUGUCg -3'
miRNA:   3'- -UGCG-CGGcu-AUGACau--GGGCAGACGG- -5'
24725 3' -55.9 NC_005264.1 + 152974 0.7 0.769841
Target:  5'- gGCGCGCCGggACcGcGCCCGauagggGCCg -3'
miRNA:   3'- -UGCGCGGCuaUGaCaUGGGCaga---CGG- -5'
24725 3' -55.9 NC_005264.1 + 161392 0.69 0.779092
Target:  5'- gGCGaugGCCGGUGCUGgcuCCCG-CggagGCCc -3'
miRNA:   3'- -UGCg--CGGCUAUGACau-GGGCaGa---CGG- -5'
24725 3' -55.9 NC_005264.1 + 68255 0.69 0.797199
Target:  5'- cCGCGCCGcggGCg--GCCUGcugCUGCCg -3'
miRNA:   3'- uGCGCGGCua-UGacaUGGGCa--GACGG- -5'
24725 3' -55.9 NC_005264.1 + 78647 0.68 0.863148
Target:  5'- cCGCGgCGGccCUGUGCCuCGUCccacuaugUGCCg -3'
miRNA:   3'- uGCGCgGCUauGACAUGG-GCAG--------ACGG- -5'
24725 3' -55.9 NC_005264.1 + 160948 0.67 0.897974
Target:  5'- uCGCGgCGGgguCUGUAgCUuUCUGCCa -3'
miRNA:   3'- uGCGCgGCUau-GACAUgGGcAGACGG- -5'
24725 3' -55.9 NC_005264.1 + 161680 0.67 0.873441
Target:  5'- cGCGCGCCGGcagACUGgcggccggaucguCCCGUgcGCCc -3'
miRNA:   3'- -UGCGCGGCUa--UGACau-----------GGGCAgaCGG- -5'
24725 3' -55.9 NC_005264.1 + 161788 0.68 0.863148
Target:  5'- cACGUGCCGA-GCg--ACCCGggugGCCa -3'
miRNA:   3'- -UGCGCGGCUaUGacaUGGGCaga-CGG- -5'
24725 3' -55.9 NC_005264.1 + 15382 0.72 0.641867
Target:  5'- gACGCGauGGUGgaGUGCCUGaucUCUGCCu -3'
miRNA:   3'- -UGCGCggCUAUgaCAUGGGC---AGACGG- -5'
24725 3' -55.9 NC_005264.1 + 51933 0.67 0.890782
Target:  5'- cCGCGCCGAgcuugGCgaggGUGCCgcuaacgCGUCgUGUCg -3'
miRNA:   3'- uGCGCGGCUa----UGa---CAUGG-------GCAG-ACGG- -5'
24725 3' -55.9 NC_005264.1 + 155069 0.7 0.741401
Target:  5'- -aGCGCCcccucGCUcaGUGCCCGaCUGCCg -3'
miRNA:   3'- ugCGCGGcua--UGA--CAUGGGCaGACGG- -5'
24725 3' -55.9 NC_005264.1 + 130866 0.68 0.831593
Target:  5'- aGCGCGCaucgGAcACgcgGCCCGUCgccGCCa -3'
miRNA:   3'- -UGCGCGg---CUaUGacaUGGGCAGa--CGG- -5'
24725 3' -55.9 NC_005264.1 + 88243 0.67 0.897974
Target:  5'- uACGCaGaCCaGAUACUGUuuGCCCG-CcGCCu -3'
miRNA:   3'- -UGCG-C-GG-CUAUGACA--UGGGCaGaCGG- -5'
24725 3' -55.9 NC_005264.1 + 66623 0.66 0.910346
Target:  5'- -gGCGCCGucGCg--GCCCGaggcaagCUGCCa -3'
miRNA:   3'- ugCGCGGCuaUGacaUGGGCa------GACGG- -5'
24725 3' -55.9 NC_005264.1 + 106331 0.7 0.750987
Target:  5'- gGCGCGCCGAUGauauuuUCUGaCUGCCg -3'
miRNA:   3'- -UGCGCGGCUAUgacau-GGGCaGACGG- -5'
24725 3' -55.9 NC_005264.1 + 154531 0.69 0.779092
Target:  5'- gGCGaCGCCGcgGCgcagGUGCCCccGUC-GCCc -3'
miRNA:   3'- -UGC-GCGGCuaUGa---CAUGGG--CAGaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.