miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24725 3' -55.9 NC_005264.1 + 393 0.66 0.921792
Target:  5'- -aGCGCCGGcGCggucgUGUACCUGUUcGCg -3'
miRNA:   3'- ugCGCGGCUaUG-----ACAUGGGCAGaCGg -5'
24725 3' -55.9 NC_005264.1 + 4112 0.66 0.910346
Target:  5'- -gGgGCCGAgGgUGU-CCCcUCUGCCa -3'
miRNA:   3'- ugCgCGGCUaUgACAuGGGcAGACGG- -5'
24725 3' -55.9 NC_005264.1 + 6888 0.66 0.916185
Target:  5'- gGCGCGUgu-UGCUGUugCCuuggcugCUGCCg -3'
miRNA:   3'- -UGCGCGgcuAUGACAugGGca-----GACGG- -5'
24725 3' -55.9 NC_005264.1 + 8401 0.66 0.937207
Target:  5'- -aGCuGCCGGaGCUGUugUUGUCgagguugaUGCCa -3'
miRNA:   3'- ugCG-CGGCUaUGACAugGGCAG--------ACGG- -5'
24725 3' -55.9 NC_005264.1 + 9714 0.68 0.863148
Target:  5'- cGCGcCGCUGAgccAUUGUGCCCGcCgcgGCa -3'
miRNA:   3'- -UGC-GCGGCUa--UGACAUGGGCaGa--CGg -5'
24725 3' -55.9 NC_005264.1 + 11840 0.68 0.831593
Target:  5'- aGCGCGCaucgGAcACgcgGCCCGUCgccGCCa -3'
miRNA:   3'- -UGCGCGg---CUaUGacaUGGGCAGa--CGG- -5'
24725 3' -55.9 NC_005264.1 + 12147 0.7 0.76047
Target:  5'- gGCGCuGCCcguUGCUGggguCUCGUCUGUCg -3'
miRNA:   3'- -UGCG-CGGcu-AUGACau--GGGCAGACGG- -5'
24725 3' -55.9 NC_005264.1 + 13187 0.66 0.932303
Target:  5'- uACGCGCUGcgcGCgg-AUCCGUCgccGCCg -3'
miRNA:   3'- -UGCGCGGCua-UGacaUGGGCAGa--CGG- -5'
24725 3' -55.9 NC_005264.1 + 15382 0.72 0.641867
Target:  5'- gACGCGauGGUGgaGUGCCUGaucUCUGCCu -3'
miRNA:   3'- -UGCGCggCUAUgaCAUGGGC---AGACGG- -5'
24725 3' -55.9 NC_005264.1 + 16079 0.7 0.750987
Target:  5'- cGCGCGgCGcuUGCUGUugCCGggUCcGCCg -3'
miRNA:   3'- -UGCGCgGCu-AUGACAugGGC--AGaCGG- -5'
24725 3' -55.9 NC_005264.1 + 17732 0.66 0.937207
Target:  5'- uGCGCGCCGcgGCgcaACCUa--UGCCa -3'
miRNA:   3'- -UGCGCGGCuaUGacaUGGGcagACGG- -5'
24725 3' -55.9 NC_005264.1 + 23420 0.67 0.870542
Target:  5'- cACGCGUaCGccaGCgGUGCCCGUCucgagUGCCc -3'
miRNA:   3'- -UGCGCG-GCua-UGaCAUGGGCAG-----ACGG- -5'
24725 3' -55.9 NC_005264.1 + 25957 0.66 0.916185
Target:  5'- uACGCGCCcacuUUGaGCgCGUCUGCUu -3'
miRNA:   3'- -UGCGCGGcuauGACaUGgGCAGACGG- -5'
24725 3' -55.9 NC_005264.1 + 26062 0.69 0.788215
Target:  5'- cACGCGCCGAaaggacucACUGgGCUgGUCUucGCCu -3'
miRNA:   3'- -UGCGCGGCUa-------UGACaUGGgCAGA--CGG- -5'
24725 3' -55.9 NC_005264.1 + 29265 0.66 0.937207
Target:  5'- gGCGCGCaGAUuguuggACUGUGCgCGggcgCgUGCCu -3'
miRNA:   3'- -UGCGCGgCUA------UGACAUGgGCa---G-ACGG- -5'
24725 3' -55.9 NC_005264.1 + 33947 0.7 0.769841
Target:  5'- gGCGCGCCGggACcGcGCCCGauagggGCCg -3'
miRNA:   3'- -UGCGCGGCuaUGaCaUGGGCaga---CGG- -5'
24725 3' -55.9 NC_005264.1 + 35504 0.69 0.779092
Target:  5'- gGCGaCGCCGcgGCgcagGUGCCCccGUC-GCCc -3'
miRNA:   3'- -UGC-GCGGCuaUGa---CAUGGG--CAGaCGG- -5'
24725 3' -55.9 NC_005264.1 + 36042 0.7 0.741401
Target:  5'- -aGCGCCcccucGCUcaGUGCCCGaCUGCCg -3'
miRNA:   3'- ugCGCGGcua--UGA--CAUGGGCaGACGG- -5'
24725 3' -55.9 NC_005264.1 + 41921 0.67 0.897974
Target:  5'- uCGCGgCGGgguCUGUAgCUuUCUGCCa -3'
miRNA:   3'- uGCGCgGCUau-GACAUgGGcAGACGG- -5'
24725 3' -55.9 NC_005264.1 + 42365 0.69 0.779092
Target:  5'- gGCGaugGCCGGUGCUGgcuCCCG-CggagGCCc -3'
miRNA:   3'- -UGCg--CGGCUAUGACau-GGGCaGa---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.