miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24725 3' -55.9 NC_005264.1 + 136842 1.12 0.002145
Target:  5'- cACGCGCCGAUACUGUACCCGUCUGCCg -3'
miRNA:   3'- -UGCGCGGCUAUGACAUGGGCAGACGG- -5'
24725 3' -55.9 NC_005264.1 + 45813 0.8 0.257181
Target:  5'- cCGCGCUGAUcgcGCUGUACUCGUCaugcGCCg -3'
miRNA:   3'- uGCGCGGCUA---UGACAUGGGCAGa---CGG- -5'
24725 3' -55.9 NC_005264.1 + 74739 0.76 0.428899
Target:  5'- cGCGCcgGCCGAcGCUGUGCCCGacgcgcaCUGCUu -3'
miRNA:   3'- -UGCG--CGGCUaUGACAUGGGCa------GACGG- -5'
24725 3' -55.9 NC_005264.1 + 15382 0.72 0.641867
Target:  5'- gACGCGauGGUGgaGUGCCUGaucUCUGCCu -3'
miRNA:   3'- -UGCGCggCUAUgaCAUGGGC---AGACGG- -5'
24725 3' -55.9 NC_005264.1 + 94122 0.71 0.682238
Target:  5'- gGCGcCGCUGGUGgaaagGUACCCG-CUGCUg -3'
miRNA:   3'- -UGC-GCGGCUAUga---CAUGGGCaGACGG- -5'
24725 3' -55.9 NC_005264.1 + 146346 0.7 0.741401
Target:  5'- uGCGCGCCGAaugACgcaUGUgACUCGUC-GCCc -3'
miRNA:   3'- -UGCGCGGCUa--UG---ACA-UGGGCAGaCGG- -5'
24725 3' -55.9 NC_005264.1 + 155069 0.7 0.741401
Target:  5'- -aGCGCCcccucGCUcaGUGCCCGaCUGCCg -3'
miRNA:   3'- ugCGCGGcua--UGA--CAUGGGCaGACGG- -5'
24725 3' -55.9 NC_005264.1 + 36042 0.7 0.741401
Target:  5'- -aGCGCCcccucGCUcaGUGCCCGaCUGCCg -3'
miRNA:   3'- ugCGCGGcua--UGA--CAUGGGCaGACGG- -5'
24725 3' -55.9 NC_005264.1 + 106331 0.7 0.750987
Target:  5'- gGCGCGCCGAUGauauuuUCUGaCUGCCg -3'
miRNA:   3'- -UGCGCGGCUAUgacau-GGGCaGACGG- -5'
24725 3' -55.9 NC_005264.1 + 16079 0.7 0.750987
Target:  5'- cGCGCGgCGcuUGCUGUugCCGggUCcGCCg -3'
miRNA:   3'- -UGCGCgGCu-AUGACAugGGC--AGaCGG- -5'
24725 3' -55.9 NC_005264.1 + 12147 0.7 0.76047
Target:  5'- gGCGCuGCCcguUGCUGggguCUCGUCUGUCg -3'
miRNA:   3'- -UGCG-CGGcu-AUGACau--GGGCAGACGG- -5'
24725 3' -55.9 NC_005264.1 + 152974 0.7 0.769841
Target:  5'- gGCGCGCCGggACcGcGCCCGauagggGCCg -3'
miRNA:   3'- -UGCGCGGCuaUGaCaUGGGCaga---CGG- -5'
24725 3' -55.9 NC_005264.1 + 33947 0.7 0.769841
Target:  5'- gGCGCGCCGggACcGcGCCCGauagggGCCg -3'
miRNA:   3'- -UGCGCGGCuaUGaCaUGGGCaga---CGG- -5'
24725 3' -55.9 NC_005264.1 + 145378 0.7 0.769841
Target:  5'- gACGCGCU--UACUGUGaaaCCGUacagaCUGCCc -3'
miRNA:   3'- -UGCGCGGcuAUGACAUg--GGCA-----GACGG- -5'
24725 3' -55.9 NC_005264.1 + 161392 0.69 0.779092
Target:  5'- gGCGaugGCCGGUGCUGgcuCCCG-CggagGCCc -3'
miRNA:   3'- -UGCg--CGGCUAUGACau-GGGCaGa---CGG- -5'
24725 3' -55.9 NC_005264.1 + 154531 0.69 0.779092
Target:  5'- gGCGaCGCCGcgGCgcagGUGCCCccGUC-GCCc -3'
miRNA:   3'- -UGC-GCGGCuaUGa---CAUGGG--CAGaCGG- -5'
24725 3' -55.9 NC_005264.1 + 42365 0.69 0.779092
Target:  5'- gGCGaugGCCGGUGCUGgcuCCCG-CggagGCCc -3'
miRNA:   3'- -UGCg--CGGCUAUGACau-GGGCaGa---CGG- -5'
24725 3' -55.9 NC_005264.1 + 35504 0.69 0.779092
Target:  5'- gGCGaCGCCGcgGCgcagGUGCCCccGUC-GCCc -3'
miRNA:   3'- -UGC-GCGGCuaUGa---CAUGGG--CAGaCGG- -5'
24725 3' -55.9 NC_005264.1 + 26062 0.69 0.788215
Target:  5'- cACGCGCCGAaaggacucACUGgGCUgGUCUucGCCu -3'
miRNA:   3'- -UGCGCGGCUa-------UGACaUGGgCAGA--CGG- -5'
24725 3' -55.9 NC_005264.1 + 155947 0.69 0.795413
Target:  5'- cGCGCGCUGggACUGcgcgGCUCGcggacgcucuggCUGCCg -3'
miRNA:   3'- -UGCGCGGCuaUGACa---UGGGCa-----------GACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.