miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24725 5' -54.6 NC_005264.1 + 32885 0.68 0.870884
Target:  5'- gGAGGCAGGCGCccagacuguauauGCguucucgaucgcgCAGGGgucgcgGGGCGCc -3'
miRNA:   3'- -CUUCGUCUGCG-------------CGa------------GUUUCa-----CCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 34266 0.67 0.902101
Target:  5'- cGAGGCGcgggcGACGCGUcgaagaguaaguUCGAGGgccccucgaGGGCGCc -3'
miRNA:   3'- -CUUCGU-----CUGCGCG------------AGUUUCa--------CCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 35005 0.68 0.867133
Target:  5'- --cGCGaGCgGCGCUCGAAGaGGaGCGCu -3'
miRNA:   3'- cuuCGUcUG-CGCGAGUUUCaCC-CGCG- -5'
24725 5' -54.6 NC_005264.1 + 35514 0.69 0.82677
Target:  5'- --cGCuGGACGUGa---AAGUGGGCGCg -3'
miRNA:   3'- cuuCG-UCUGCGCgaguUUCACCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 35788 0.73 0.620946
Target:  5'- gGgcGCGGugGCGCcgUCGuGGcGGGCGCc -3'
miRNA:   3'- -CuuCGUCugCGCG--AGUuUCaCCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 36173 0.66 0.936194
Target:  5'- -cGGCAGGCgGCGUUUcguGGuUGGGCGa -3'
miRNA:   3'- cuUCGUCUG-CGCGAGuu-UC-ACCCGCg -5'
24725 5' -54.6 NC_005264.1 + 36489 0.69 0.832716
Target:  5'- aAGGCGGcguuuucgugcgaaGCGCGCggccucgaCGAGGcGGGCGCa -3'
miRNA:   3'- cUUCGUC--------------UGCGCGa-------GUUUCaCCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 39491 0.69 0.82677
Target:  5'- aGggGCAGGCcuGCGCUgu-GGUGGaCGCc -3'
miRNA:   3'- -CuuCGUCUG--CGCGAguuUCACCcGCG- -5'
24725 5' -54.6 NC_005264.1 + 40251 0.66 0.931123
Target:  5'- --cGUGGACGUGCgguacccCAAcgcGGUGcGGCGCu -3'
miRNA:   3'- cuuCGUCUGCGCGa------GUU---UCAC-CCGCG- -5'
24725 5' -54.6 NC_005264.1 + 43378 0.66 0.949947
Target:  5'- uAGGUacgAGACGCuagggCAGAG-GGGCGCg -3'
miRNA:   3'- cUUCG---UCUGCGcga--GUUUCaCCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 43872 0.71 0.723585
Target:  5'- aGAGaCGGAacgaGCGCggCAAAGgGGGCGCc -3'
miRNA:   3'- cUUC-GUCUg---CGCGa-GUUUCaCCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 43996 0.71 0.703404
Target:  5'- cGAGGCGGACuuGgGCagggUCGAGGUGGGC-Ca -3'
miRNA:   3'- -CUUCGUCUG--CgCG----AGUUUCACCCGcG- -5'
24725 5' -54.6 NC_005264.1 + 47392 0.66 0.936194
Target:  5'- uAAGCgagAGugGCGCgu--GGuUGGGUGCg -3'
miRNA:   3'- cUUCG---UCugCGCGaguuUC-ACCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 50557 0.66 0.94102
Target:  5'- cGAAGCuAGGCGCGCgCGugcgGGaaGCGCa -3'
miRNA:   3'- -CUUCG-UCUGCGCGaGUuucaCC--CGCG- -5'
24725 5' -54.6 NC_005264.1 + 50876 0.66 0.936194
Target:  5'- cGAA-CAGGCGCGUcCAucc-GGGCGCu -3'
miRNA:   3'- -CUUcGUCUGCGCGaGUuucaCCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 54238 0.71 0.752254
Target:  5'- cGAGGCGGccccGCGCGC-CAacgugucGAGUGGGaGCg -3'
miRNA:   3'- -CUUCGUC----UGCGCGaGU-------UUCACCCgCG- -5'
24725 5' -54.6 NC_005264.1 + 54722 0.66 0.94102
Target:  5'- gGAAGC-GugGCGCUCAc-GUGGaCGg -3'
miRNA:   3'- -CUUCGuCugCGCGAGUuuCACCcGCg -5'
24725 5' -54.6 NC_005264.1 + 58521 0.68 0.891539
Target:  5'- uAAGCGGcguCGCGcCUCAAGGUcacgaaaaacucagaGGGuCGCg -3'
miRNA:   3'- cUUCGUCu--GCGC-GAGUUUCA---------------CCC-GCG- -5'
24725 5' -54.6 NC_005264.1 + 58766 0.69 0.809302
Target:  5'- aGAGGCGcACGCGCggu-GGUcGGCGCa -3'
miRNA:   3'- -CUUCGUcUGCGCGaguuUCAcCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 59022 0.68 0.874581
Target:  5'- gGAGGCAGGCGCG-UC-AGGUcGGucuccGCGCa -3'
miRNA:   3'- -CUUCGUCUGCGCgAGuUUCA-CC-----CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.