miRNA display CGI


Results 1 - 20 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24725 5' -54.6 NC_005264.1 + 2886 0.67 0.920247
Target:  5'- cGggGCGcGGCGCGg-CGGGGaGGGCGa -3'
miRNA:   3'- -CuuCGU-CUGCGCgaGUUUCaCCCGCg -5'
24725 5' -54.6 NC_005264.1 + 3600 0.7 0.762902
Target:  5'- uGAGUAGGcCGUGgUgGAcGGUGGGCGCu -3'
miRNA:   3'- cUUCGUCU-GCGCgAgUU-UCACCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 6901 0.7 0.789327
Target:  5'- --cGCAGucccaGCGCGCggcuuuccGUGGGCGCg -3'
miRNA:   3'- cuuCGUC-----UGCGCGaguuu---CACCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 7766 0.68 0.859468
Target:  5'- -cGGCAGuCGgGCacugagCGAGG-GGGCGCu -3'
miRNA:   3'- cuUCGUCuGCgCGa-----GUUUCaCCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 8595 0.67 0.902101
Target:  5'- --cGCAGACGCGCguguuccuccgCAAcgcgcaccGGUaGGCGCu -3'
miRNA:   3'- cuuCGUCUGCGCGa----------GUU--------UCAcCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 10229 0.66 0.949947
Target:  5'- -uGGCcu-CGgGCUCAAuAGcGGGCGCg -3'
miRNA:   3'- cuUCGucuGCgCGAGUU-UCaCCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 12416 0.68 0.859468
Target:  5'- cGAGGCGGcccgcuACGUGCUUGGAGgcgcGGUGCg -3'
miRNA:   3'- -CUUCGUC------UGCGCGAGUUUCac--CCGCG- -5'
24725 5' -54.6 NC_005264.1 + 13314 0.69 0.809302
Target:  5'- gGAGGaCGGcCGCGCggagcaGGAGgagagGGGCGCg -3'
miRNA:   3'- -CUUC-GUCuGCGCGag----UUUCa----CCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 15386 0.7 0.781884
Target:  5'- --cGCAGugGCgauaGCUUGAGGuUGGGuCGCg -3'
miRNA:   3'- cuuCGUCugCG----CGAGUUUC-ACCC-GCG- -5'
24725 5' -54.6 NC_005264.1 + 16544 0.66 0.949947
Target:  5'- --cGCuuGCGCGUauuUCAGcgcGGUGGGCGg -3'
miRNA:   3'- cuuCGucUGCGCG---AGUU---UCACCCGCg -5'
24725 5' -54.6 NC_005264.1 + 17106 0.68 0.886729
Target:  5'- aGAAGCAGugGcCGaccgaaacgcauauCUCuguAGGcuUGGGCGCg -3'
miRNA:   3'- -CUUCGUCugC-GC--------------GAGu--UUC--ACCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 18051 0.68 0.874581
Target:  5'- cGAAGCGG-CgGCGCcgCGAGccaGGGCGCg -3'
miRNA:   3'- -CUUCGUCuG-CGCGa-GUUUca-CCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 18120 0.68 0.867133
Target:  5'- aGAGGCuaagAGACGUGCUUGcuGUcuGGCGCg -3'
miRNA:   3'- -CUUCG----UCUGCGCGAGUuuCAc-CCGCG- -5'
24725 5' -54.6 NC_005264.1 + 18418 0.67 0.914441
Target:  5'- cGgcGCAGGCGCGCccUCucgcucGGCGCg -3'
miRNA:   3'- -CuuCGUCUGCGCG--AGuuucacCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 21506 0.67 0.925807
Target:  5'- --cGUGGGCacCGCcgUCGcAGUGGGCGCa -3'
miRNA:   3'- cuuCGUCUGc-GCG--AGUuUCACCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 22757 0.67 0.914441
Target:  5'- cGAAGCGauagcGGCGgGCaauGAG-GGGCGCg -3'
miRNA:   3'- -CUUCGU-----CUGCgCGaguUUCaCCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 26793 0.66 0.94102
Target:  5'- --uGCAcGCGgGCUUccacgaggaGAAGUGGGcCGCg -3'
miRNA:   3'- cuuCGUcUGCgCGAG---------UUUCACCC-GCG- -5'
24725 5' -54.6 NC_005264.1 + 29171 0.72 0.692195
Target:  5'- cGAGCAGGCGUuccucuaGCUCcccAGGUGGcGUGCa -3'
miRNA:   3'- cUUCGUCUGCG-------CGAGu--UUCACC-CGCG- -5'
24725 5' -54.6 NC_005264.1 + 30112 0.67 0.914441
Target:  5'- aGAuGCGGGCgGCGCggCAccGAGcUGcGGCGCa -3'
miRNA:   3'- -CUuCGUCUG-CGCGa-GU--UUC-AC-CCGCG- -5'
24725 5' -54.6 NC_005264.1 + 31569 0.69 0.851593
Target:  5'- cGAcGUGGAgGCGC-CAGAGgugGGGCGa -3'
miRNA:   3'- -CUuCGUCUgCGCGaGUUUCa--CCCGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.