miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24725 5' -54.6 NC_005264.1 + 136877 1.13 0.002141
Target:  5'- cGAAGCAGACGCGCUCAAAGUGGGCGCg -3'
miRNA:   3'- -CUUCGUCUGCGCGAGUUUCACCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 82364 0.76 0.451642
Target:  5'- cAGGCAGGCGCG-UCGAuccGGUgccGGGCGCa -3'
miRNA:   3'- cUUCGUCUGCGCgAGUU---UCA---CCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 154969 0.76 0.470416
Target:  5'- --cGCAGAUGCGCagCGAAcGUGGGgGCc -3'
miRNA:   3'- cuuCGUCUGCGCGa-GUUU-CACCCgCG- -5'
24725 5' -54.6 NC_005264.1 + 131604 0.74 0.549054
Target:  5'- gGGAGCGG-CGCGC-----GUGGGCGCg -3'
miRNA:   3'- -CUUCGUCuGCGCGaguuuCACCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 133869 0.73 0.610589
Target:  5'- -cAGCGGcucCGCGCUCAGAGUcuuGGCGUu -3'
miRNA:   3'- cuUCGUCu--GCGCGAGUUUCAc--CCGCG- -5'
24725 5' -54.6 NC_005264.1 + 154814 0.73 0.620946
Target:  5'- gGgcGCGGugGCGCcgUCGuGGcGGGCGCc -3'
miRNA:   3'- -CuuCGUCugCGCG--AGUuUCaCCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 35788 0.73 0.620946
Target:  5'- gGgcGCGGugGCGCcgUCGuGGcGGGCGCc -3'
miRNA:   3'- -CuuCGUCugCGCG--AGUuUCaCCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 136458 0.73 0.641677
Target:  5'- uGAGGC---CGCGCUCAGAGacGGCGCc -3'
miRNA:   3'- -CUUCGucuGCGCGAGUUUCacCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 129142 0.72 0.662377
Target:  5'- --cGCAGACGCgGCUCGGAGcgauGCGCg -3'
miRNA:   3'- cuuCGUCUGCG-CGAGUUUCacc-CGCG- -5'
24725 5' -54.6 NC_005264.1 + 87522 0.72 0.682977
Target:  5'- -cGGCAcuGGCGCGCggCAGAugcugcagcGUGGGCGUa -3'
miRNA:   3'- cuUCGU--CUGCGCGa-GUUU---------CACCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 29171 0.72 0.692195
Target:  5'- cGAGCAGGCGUuccucuaGCUCcccAGGUGGcGUGCa -3'
miRNA:   3'- cUUCGUCUGCG-------CGAGu--UUCACC-CGCG- -5'
24725 5' -54.6 NC_005264.1 + 143208 0.72 0.693217
Target:  5'- -cAGCAGGCagccagaaaGCGUUCAGAGgggagGGGCGa -3'
miRNA:   3'- cuUCGUCUG---------CGCGAGUUUCa----CCCGCg -5'
24725 5' -54.6 NC_005264.1 + 43996 0.71 0.703404
Target:  5'- cGAGGCGGACuuGgGCagggUCGAGGUGGGC-Ca -3'
miRNA:   3'- -CUUCGUCUG--CgCG----AGUUUCACCCGcG- -5'
24725 5' -54.6 NC_005264.1 + 43872 0.71 0.723585
Target:  5'- aGAGaCGGAacgaGCGCggCAAAGgGGGCGCc -3'
miRNA:   3'- cUUC-GUCUg---CGCGa-GUUUCaCCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 84910 0.71 0.737524
Target:  5'- uGAGUAGcuggcgacgauggcuGCGCGCUCuguuguAGUGuGGCGCc -3'
miRNA:   3'- cUUCGUC---------------UGCGCGAGuu----UCAC-CCGCG- -5'
24725 5' -54.6 NC_005264.1 + 54238 0.71 0.752254
Target:  5'- cGAGGCGGccccGCGCGC-CAacgugucGAGUGGGaGCg -3'
miRNA:   3'- -CUUCGUC----UGCGCGaGU-------UUCACCCgCG- -5'
24725 5' -54.6 NC_005264.1 + 3600 0.7 0.762902
Target:  5'- uGAGUAGGcCGUGgUgGAcGGUGGGCGCu -3'
miRNA:   3'- cUUCGUCU-GCGCgAgUU-UCACCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 75100 0.7 0.762902
Target:  5'- -cGGCAGGCGCcgGCgCcGAGcugGGGCGCa -3'
miRNA:   3'- cuUCGUCUGCG--CGaGuUUCa--CCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 87443 0.7 0.772457
Target:  5'- --cGCGGcCGCGCagAcGGUGGcGCGCa -3'
miRNA:   3'- cuuCGUCuGCGCGagUuUCACC-CGCG- -5'
24725 5' -54.6 NC_005264.1 + 15386 0.7 0.781884
Target:  5'- --cGCAGugGCgauaGCUUGAGGuUGGGuCGCg -3'
miRNA:   3'- cuuCGUCugCG----CGAGUUUC-ACCC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.