miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24725 5' -54.6 NC_005264.1 + 136877 1.13 0.002141
Target:  5'- cGAAGCAGACGCGCUCAAAGUGGGCGCg -3'
miRNA:   3'- -CUUCGUCUGCGCGAGUUUCACCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 99852 0.69 0.843513
Target:  5'- aGAAGCGcuacuGACGUGCgcCAAGGgcUGGGCGa -3'
miRNA:   3'- -CUUCGU-----CUGCGCGa-GUUUC--ACCCGCg -5'
24725 5' -54.6 NC_005264.1 + 126792 0.68 0.859468
Target:  5'- -cGGCAGuCGgGCacugagCGAGG-GGGCGCu -3'
miRNA:   3'- cuUCGUCuGCgCGa-----GUUUCaCCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 70955 0.66 0.949947
Target:  5'- uGGAGCugccuGGGCuGuCGCUCAAAauuggaacGUGGcGCGCa -3'
miRNA:   3'- -CUUCG-----UCUG-C-GCGAGUUU--------CACC-CGCG- -5'
24725 5' -54.6 NC_005264.1 + 3600 0.7 0.762902
Target:  5'- uGAGUAGGcCGUGgUgGAcGGUGGGCGCu -3'
miRNA:   3'- cUUCGUCU-GCGCgAgUU-UCACCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 75100 0.7 0.762902
Target:  5'- -cGGCAGGCGCcgGCgCcGAGcugGGGCGCa -3'
miRNA:   3'- cuUCGUCUGCG--CGaGuUUCa--CCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 6901 0.7 0.789327
Target:  5'- --cGCAGucccaGCGCGCggcuuuccGUGGGCGCg -3'
miRNA:   3'- cuuCGUC-----UGCGCGaguuu---CACCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 58766 0.69 0.809302
Target:  5'- aGAGGCGcACGCGCggu-GGUcGGCGCa -3'
miRNA:   3'- -CUUCGUcUGCGCGaguuUCAcCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 132341 0.69 0.809302
Target:  5'- gGAGGaCGGcCGCGCggagcaGGAGgagagGGGCGCg -3'
miRNA:   3'- -CUUC-GUCuGCGCGag----UUUCa----CCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 116980 0.69 0.843513
Target:  5'- -uGGCGG-CGCGCagacUCGAAGUcuuGGGgGCg -3'
miRNA:   3'- cuUCGUCuGCGCG----AGUUUCA---CCCgCG- -5'
24725 5' -54.6 NC_005264.1 + 158518 0.69 0.82677
Target:  5'- aGggGCAGGCcuGCGCUgu-GGUGGaCGCc -3'
miRNA:   3'- -CuuCGUCUG--CGCGAguuUCACCcGCG- -5'
24725 5' -54.6 NC_005264.1 + 118933 0.69 0.809302
Target:  5'- cGAGGCgacGGcCGCGCUCAucGUcuccGGCGCc -3'
miRNA:   3'- -CUUCG---UCuGCGCGAGUuuCAc---CCGCG- -5'
24725 5' -54.6 NC_005264.1 + 154814 0.73 0.620946
Target:  5'- gGgcGCGGugGCGCcgUCGuGGcGGGCGCc -3'
miRNA:   3'- -CuuCGUCugCGCG--AGUuUCaCCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 36489 0.69 0.832716
Target:  5'- aAGGCGGcguuuucgugcgaaGCGCGCggccucgaCGAGGcGGGCGCa -3'
miRNA:   3'- cUUCGUC--------------UGCGCGa-------GUUUCaCCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 136458 0.73 0.641677
Target:  5'- uGAGGC---CGCGCUCAGAGacGGCGCc -3'
miRNA:   3'- -CUUCGucuGCGCGAGUUUCacCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 107678 0.69 0.809302
Target:  5'- --cGUAGACGCgGUUCAGGGUGGauuuGCGg -3'
miRNA:   3'- cuuCGUCUGCG-CGAGUUUCACC----CGCg -5'
24725 5' -54.6 NC_005264.1 + 98222 0.69 0.835236
Target:  5'- cGgcGuCGGGcCGCGCUgCGGAGagguuaUGGGCGCa -3'
miRNA:   3'- -CuuC-GUCU-GCGCGA-GUUUC------ACCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 150596 0.69 0.851593
Target:  5'- cGAcGUGGAgGCGC-CAGAGgugGGGCGa -3'
miRNA:   3'- -CUuCGUCUgCGCGaGUUUCa--CCCGCg -5'
24725 5' -54.6 NC_005264.1 + 87522 0.72 0.682977
Target:  5'- -cGGCAcuGGCGCGCggCAGAugcugcagcGUGGGCGUa -3'
miRNA:   3'- cuUCGU--CUGCGCGa-GUUU---------CACCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 87443 0.7 0.772457
Target:  5'- --cGCGGcCGCGCagAcGGUGGcGCGCa -3'
miRNA:   3'- cuuCGUCuGCGCGagUuUCACC-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.