Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24728 | 3' | -50.3 | NC_005264.1 | + | 1616 | 0.68 | 0.984283 |
Target: 5'- uACGGGAcg--CCGGUg-GGCGCGGCu -3' miRNA: 3'- uUGUUCUcaaaGGCUAagCCGCGUCG- -5' |
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24728 | 3' | -50.3 | NC_005264.1 | + | 20251 | 0.69 | 0.969452 |
Target: 5'- gGGCAGGGGUUg------CGGCGCGGCc -3' miRNA: 3'- -UUGUUCUCAAaggcuaaGCCGCGUCG- -5' |
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24728 | 3' | -50.3 | NC_005264.1 | + | 27446 | 0.67 | 0.99058 |
Target: 5'- cAGCcAGAccugcgCCGAg-CGGCGCAGCa -3' miRNA: 3'- -UUGuUCUcaaa--GGCUaaGCCGCGUCG- -5' |
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24728 | 3' | -50.3 | NC_005264.1 | + | 30222 | 0.66 | 0.996126 |
Target: 5'- uAACAuaGGUUUCCGcggcCaGCGCGGCa -3' miRNA: 3'- -UUGUucUCAAAGGCuaa-GcCGCGUCG- -5' |
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24728 | 3' | -50.3 | NC_005264.1 | + | 31458 | 0.66 | 0.993841 |
Target: 5'- cGACGAGAGcgucgCCGAUg-GGCGUGGa -3' miRNA: 3'- -UUGUUCUCaaa--GGCUAagCCGCGUCg -5' |
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24728 | 3' | -50.3 | NC_005264.1 | + | 33792 | 0.66 | 0.996711 |
Target: 5'- uAGCcuGGG-UUCCGAa-CGGCGCGGg -3' miRNA: 3'- -UUGuuCUCaAAGGCUaaGCCGCGUCg -5' |
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24728 | 3' | -50.3 | NC_005264.1 | + | 37372 | 0.68 | 0.980129 |
Target: 5'- gAGCGAGcc--UCCGAgcagGGCGCGGCa -3' miRNA: 3'- -UUGUUCucaaAGGCUaag-CCGCGUCG- -5' |
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24728 | 3' | -50.3 | NC_005264.1 | + | 37397 | 0.66 | 0.996656 |
Target: 5'- cGCGAGAGUguaCGuggaggaGUUCGGCauggccguggaGCAGCa -3' miRNA: 3'- uUGUUCUCAaagGC-------UAAGCCG-----------CGUCG- -5' |
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24728 | 3' | -50.3 | NC_005264.1 | + | 38323 | 0.66 | 0.99587 |
Target: 5'- cGACGAGGGUUggcgggcccuggCCGugaugcugggCGGCGgGGCg -3' miRNA: 3'- -UUGUUCUCAAa-----------GGCuaa-------GCCGCgUCG- -5' |
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24728 | 3' | -50.3 | NC_005264.1 | + | 42223 | 0.72 | 0.888226 |
Target: 5'- ----cGGGUUUCCGAggCGGCuaaacaGCGGCa -3' miRNA: 3'- uuguuCUCAAAGGCUaaGCCG------CGUCG- -5' |
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24728 | 3' | -50.3 | NC_005264.1 | + | 44909 | 0.67 | 0.986094 |
Target: 5'- gGGCGGGAGgaga-GAUcCGGCGCAaGCg -3' miRNA: 3'- -UUGUUCUCaaaggCUAaGCCGCGU-CG- -5' |
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24728 | 3' | -50.3 | NC_005264.1 | + | 51583 | 0.66 | 0.996126 |
Target: 5'- cGACGAucGAGUUUCCcg--CGcauacGCGCAGCg -3' miRNA: 3'- -UUGUU--CUCAAAGGcuaaGC-----CGCGUCG- -5' |
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24728 | 3' | -50.3 | NC_005264.1 | + | 55123 | 0.66 | 0.996601 |
Target: 5'- cACGAGGGUUcgacaccccgCCGugcgcugugcUGGCGCAGCg -3' miRNA: 3'- uUGUUCUCAAa---------GGCuaa-------GCCGCGUCG- -5' |
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24728 | 3' | -50.3 | NC_005264.1 | + | 55807 | 0.73 | 0.835292 |
Target: 5'- uACGAGAGcaacucaacauucagCCGGUggCGGCGCGGCu -3' miRNA: 3'- uUGUUCUCaaa------------GGCUAa-GCCGCGUCG- -5' |
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24728 | 3' | -50.3 | NC_005264.1 | + | 62259 | 0.68 | 0.984283 |
Target: 5'- uGGCGAcGGUUUCCGAgaCGauCGCGGCa -3' miRNA: 3'- -UUGUUcUCAAAGGCUaaGCc-GCGUCG- -5' |
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24728 | 3' | -50.3 | NC_005264.1 | + | 81535 | 0.66 | 0.9947 |
Target: 5'- cACGAucGGUUUCCGuaaccaaagCgGGCGCAGCa -3' miRNA: 3'- uUGUUc-UCAAAGGCuaa------G-CCGCGUCG- -5' |
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24728 | 3' | -50.3 | NC_005264.1 | + | 83851 | 0.69 | 0.959124 |
Target: 5'- cGGCAGGuaacUCCuuaguUUCGGCGCGGCa -3' miRNA: 3'- -UUGUUCucaaAGGcu---AAGCCGCGUCG- -5' |
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24728 | 3' | -50.3 | NC_005264.1 | + | 98798 | 0.66 | 0.993841 |
Target: 5'- cGCGAGA---UCgGGUaUCGGCGguGCu -3' miRNA: 3'- uUGUUCUcaaAGgCUA-AGCCGCguCG- -5' |
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24728 | 3' | -50.3 | NC_005264.1 | + | 103691 | 0.66 | 0.993563 |
Target: 5'- gGGCGAGGGggaagUUGAgggccaguggagcggCGGCGCGGCa -3' miRNA: 3'- -UUGUUCUCaaa--GGCUaa-------------GCCGCGUCG- -5' |
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24728 | 3' | -50.3 | NC_005264.1 | + | 110022 | 0.66 | 0.996126 |
Target: 5'- -cCGAGuGUccaaUUCaCGAgauugcagCGGCGCGGCa -3' miRNA: 3'- uuGUUCuCA----AAG-GCUaa------GCCGCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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