miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24728 3' -50.3 NC_005264.1 + 55807 0.73 0.835292
Target:  5'- uACGAGAGcaacucaacauucagCCGGUggCGGCGCGGCu -3'
miRNA:   3'- uUGUUCUCaaa------------GGCUAa-GCCGCGUCG- -5'
24728 3' -50.3 NC_005264.1 + 30222 0.66 0.996126
Target:  5'- uAACAuaGGUUUCCGcggcCaGCGCGGCa -3'
miRNA:   3'- -UUGUucUCAAAGGCuaa-GcCGCGUCG- -5'
24728 3' -50.3 NC_005264.1 + 27446 0.67 0.99058
Target:  5'- cAGCcAGAccugcgCCGAg-CGGCGCAGCa -3'
miRNA:   3'- -UUGuUCUcaaa--GGCUaaGCCGCGUCG- -5'
24728 3' -50.3 NC_005264.1 + 62259 0.68 0.984283
Target:  5'- uGGCGAcGGUUUCCGAgaCGauCGCGGCa -3'
miRNA:   3'- -UUGUUcUCAAAGGCUaaGCc-GCGUCG- -5'
24728 3' -50.3 NC_005264.1 + 136227 0.68 0.982297
Target:  5'- uAACGGGAGgg-CCGAggUGGCGaCGGa -3'
miRNA:   3'- -UUGUUCUCaaaGGCUaaGCCGC-GUCg -5'
24728 3' -50.3 NC_005264.1 + 37372 0.68 0.980129
Target:  5'- gAGCGAGcc--UCCGAgcagGGCGCGGCa -3'
miRNA:   3'- -UUGUUCucaaAGGCUaag-CCGCGUCG- -5'
24728 3' -50.3 NC_005264.1 + 152818 0.66 0.996711
Target:  5'- uAGCcuGGG-UUCCGAa-CGGCGCGGg -3'
miRNA:   3'- -UUGuuCUCaAAGGCUaaGCCGCGUCg -5'
24728 3' -50.3 NC_005264.1 + 133425 0.66 0.996711
Target:  5'- uGACAuGAccuccUCCGAUgCGGCGguGCc -3'
miRNA:   3'- -UUGUuCUcaa--AGGCUAaGCCGCguCG- -5'
24728 3' -50.3 NC_005264.1 + 51583 0.66 0.996126
Target:  5'- cGACGAucGAGUUUCCcg--CGcauacGCGCAGCg -3'
miRNA:   3'- -UUGUU--CUCAAAGGcuaaGC-----CGCGUCG- -5'
24728 3' -50.3 NC_005264.1 + 157350 0.66 0.99587
Target:  5'- cGACGAGGGUUggcgggcccuggCCGugaugcugggCGGCGgGGCg -3'
miRNA:   3'- -UUGUUCUCAAa-----------GGCuaa-------GCCGCgUCG- -5'
24728 3' -50.3 NC_005264.1 + 120643 0.68 0.984283
Target:  5'- uACGGGAcg--CCGGUg-GGCGCGGCu -3'
miRNA:   3'- uUGUUCUcaaaGGCUAagCCGCGUCG- -5'
24728 3' -50.3 NC_005264.1 + 42223 0.72 0.888226
Target:  5'- ----cGGGUUUCCGAggCGGCuaaacaGCGGCa -3'
miRNA:   3'- uuguuCUCAAAGGCUaaGCCG------CGUCG- -5'
24728 3' -50.3 NC_005264.1 + 55123 0.66 0.996601
Target:  5'- cACGAGGGUUcgacaccccgCCGugcgcugugcUGGCGCAGCg -3'
miRNA:   3'- uUGUUCUCAAa---------GGCuaa-------GCCGCGUCG- -5'
24728 3' -50.3 NC_005264.1 + 83851 0.69 0.959124
Target:  5'- cGGCAGGuaacUCCuuaguUUCGGCGCGGCa -3'
miRNA:   3'- -UUGUUCucaaAGGcu---AAGCCGCGUCG- -5'
24728 3' -50.3 NC_005264.1 + 150485 0.66 0.993841
Target:  5'- cGACGAGAGcgucgCCGAUg-GGCGUGGa -3'
miRNA:   3'- -UUGUUCUCaaa--GGCUAagCCGCGUCg -5'
24728 3' -50.3 NC_005264.1 + 156424 0.66 0.996656
Target:  5'- cGCGAGAGUguaCGuggaggaGUUCGGCauggccguggaGCAGCa -3'
miRNA:   3'- uUGUUCUCAaagGC-------UAAGCCG-----------CGUCG- -5'
24728 3' -50.3 NC_005264.1 + 20251 0.69 0.969452
Target:  5'- gGGCAGGGGUUg------CGGCGCGGCc -3'
miRNA:   3'- -UUGUUCUCAAaggcuaaGCCGCGUCG- -5'
24728 3' -50.3 NC_005264.1 + 137867 1.11 0.007335
Target:  5'- aAACAAGAGUUUCCGAUUCGGCGCAGCg -3'
miRNA:   3'- -UUGUUCUCAAAGGCUAAGCCGCGUCG- -5'
24728 3' -50.3 NC_005264.1 + 1616 0.68 0.984283
Target:  5'- uACGGGAcg--CCGGUg-GGCGCGGCu -3'
miRNA:   3'- uUGUUCUcaaaGGCUAagCCGCGUCG- -5'
24728 3' -50.3 NC_005264.1 + 44909 0.67 0.986094
Target:  5'- gGGCGGGAGgaga-GAUcCGGCGCAaGCg -3'
miRNA:   3'- -UUGUUCUCaaaggCUAaGCCGCGU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.