Results 21 - 40 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24729 | 3' | -52.1 | NC_005264.1 | + | 4086 | 0.66 | 0.983467 |
Target: 5'- uUGCACGgGCG-GCGucgcGGcACGACGg -3' miRNA: 3'- -ACGUGCgCGCgCGCuuuaUC-UGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 74299 | 0.66 | 0.983467 |
Target: 5'- aGCgGCGgucugGCGCGCGgcAUGGcCAACGa -3' miRNA: 3'- aCG-UGCg----CGCGCGCuuUAUCuGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 152228 | 0.66 | 0.986995 |
Target: 5'- gGCACuuaauGCcuCGCGCGAuAUGGAUcGCGg -3' miRNA: 3'- aCGUG-----CGc-GCGCGCUuUAUCUGuUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 19003 | 0.66 | 0.987625 |
Target: 5'- aUGgGCGUacccaaacaagauaaGCGgGCGuGAUGGACGGCa -3' miRNA: 3'- -ACgUGCG---------------CGCgCGCuUUAUCUGUUGc -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 48707 | 0.66 | 0.986995 |
Target: 5'- cGguCGCuCGCGgGAGAUgAGGCGGCc -3' miRNA: 3'- aCguGCGcGCGCgCUUUA-UCUGUUGc -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 14548 | 0.66 | 0.988525 |
Target: 5'- cGCACGCGCGCGgucuccaGAAucucccgccGGGCAAa- -3' miRNA: 3'- aCGUGCGCGCGCg------CUUua-------UCUGUUgc -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 126554 | 0.66 | 0.988525 |
Target: 5'- gGCucuuCGCGC-CGCGA---AGACGugGu -3' miRNA: 3'- aCGu---GCGCGcGCGCUuuaUCUGUugC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 134805 | 0.66 | 0.988525 |
Target: 5'- gGCGuCGCGCGCGcCGGA--AGACc--- -3' miRNA: 3'- aCGU-GCGCGCGC-GCUUuaUCUGuugc -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 45341 | 0.66 | 0.989912 |
Target: 5'- cGCGC-CGCGCcCGAGAcgAGGCGAa- -3' miRNA: 3'- aCGUGcGCGCGcGCUUUa-UCUGUUgc -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 2505 | 0.66 | 0.989912 |
Target: 5'- gGCcucGCGCGacuucaGCGCGGG--GGGCGACu -3' miRNA: 3'- aCG---UGCGCg-----CGCGCUUuaUCUGUUGc -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 126754 | 0.66 | 0.986995 |
Target: 5'- aGC-CGCGC-CGaaGAGAgGGACAGCGa -3' miRNA: 3'- aCGuGCGCGcGCg-CUUUaUCUGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 109618 | 0.66 | 0.986995 |
Target: 5'- aGCAaaugGCGUGgGCGggGggcGCGACGg -3' miRNA: 3'- aCGUg---CGCGCgCGCuuUaucUGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 29283 | 0.66 | 0.983467 |
Target: 5'- cUGUGCGCGgGCGCGugccu--CGACGu -3' miRNA: 3'- -ACGUGCGCgCGCGCuuuaucuGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 30404 | 0.66 | 0.983467 |
Target: 5'- cGguCGCGCGCcgguGCGGAG-AGcuGCGGCGg -3' miRNA: 3'- aCguGCGCGCG----CGCUUUaUC--UGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 156687 | 0.66 | 0.983467 |
Target: 5'- uUGUACaGCcCGCGCGAGAcccaGGACGgGCGg -3' miRNA: 3'- -ACGUG-CGcGCGCGCUUUa---UCUGU-UGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 101007 | 0.66 | 0.985134 |
Target: 5'- cGUACGCgGCGCagGCGAGccAGGCAcugcccgGCGa -3' miRNA: 3'- aCGUGCG-CGCG--CGCUUuaUCUGU-------UGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 44273 | 0.66 | 0.985311 |
Target: 5'- cGuCACGC-CGCGCGGAugAGAUcaccgAGCGg -3' miRNA: 3'- aC-GUGCGcGCGCGCUUuaUCUG-----UUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 51999 | 0.66 | 0.985311 |
Target: 5'- cGgACGuCGCGCGCGGA----GCGACc -3' miRNA: 3'- aCgUGC-GCGCGCGCUUuaucUGUUGc -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 45682 | 0.66 | 0.986995 |
Target: 5'- aGCACGUG-GCGCGAucccgggGGAaaaCAACa -3' miRNA: 3'- aCGUGCGCgCGCGCUuua----UCU---GUUGc -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 58633 | 0.66 | 0.986995 |
Target: 5'- gUGCgACGCGUGCucugcgGCGAGGUcGACcACa -3' miRNA: 3'- -ACG-UGCGCGCG------CGCUUUAuCUGuUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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