miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 3' -52.1 NC_005264.1 + 13954 0.66 0.989912
Target:  5'- aUGcCACGCG-GCGaCGAGG-AGACgAGCGa -3'
miRNA:   3'- -AC-GUGCGCgCGC-GCUUUaUCUG-UUGC- -5'
24729 3' -52.1 NC_005264.1 + 45682 0.66 0.986995
Target:  5'- aGCACGUG-GCGCGAucccgggGGAaaaCAACa -3'
miRNA:   3'- aCGUGCGCgCGCGCUuua----UCU---GUUGc -5'
24729 3' -52.1 NC_005264.1 + 51999 0.66 0.985311
Target:  5'- cGgACGuCGCGCGCGGA----GCGACc -3'
miRNA:   3'- aCgUGC-GCGCGCGCUUuaucUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 44273 0.66 0.985311
Target:  5'- cGuCACGC-CGCGCGGAugAGAUcaccgAGCGg -3'
miRNA:   3'- aC-GUGCGcGCGCGCUUuaUCUG-----UUGC- -5'
24729 3' -52.1 NC_005264.1 + 101007 0.66 0.985134
Target:  5'- cGUACGCgGCGCagGCGAGccAGGCAcugcccgGCGa -3'
miRNA:   3'- aCGUGCG-CGCG--CGCUUuaUCUGU-------UGC- -5'
24729 3' -52.1 NC_005264.1 + 156687 0.66 0.983467
Target:  5'- uUGUACaGCcCGCGCGAGAcccaGGACGgGCGg -3'
miRNA:   3'- -ACGUG-CGcGCGCGCUUUa---UCUGU-UGC- -5'
24729 3' -52.1 NC_005264.1 + 30404 0.66 0.983467
Target:  5'- cGguCGCGCGCcgguGCGGAG-AGcuGCGGCGg -3'
miRNA:   3'- aCguGCGCGCG----CGCUUUaUC--UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 29283 0.66 0.983467
Target:  5'- cUGUGCGCGgGCGCGugccu--CGACGu -3'
miRNA:   3'- -ACGUGCGCgCGCGCuuuaucuGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 74299 0.66 0.983467
Target:  5'- aGCgGCGgucugGCGCGCGgcAUGGcCAACGa -3'
miRNA:   3'- aCG-UGCg----CGCGCGCuuUAUCuGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 58633 0.66 0.986995
Target:  5'- gUGCgACGCGUGCucugcgGCGAGGUcGACcACa -3'
miRNA:   3'- -ACG-UGCGCGCG------CGCUUUAuCUGuUGc -5'
24729 3' -52.1 NC_005264.1 + 109618 0.66 0.986995
Target:  5'- aGCAaaugGCGUGgGCGggGggcGCGACGg -3'
miRNA:   3'- aCGUg---CGCGCgCGCuuUaucUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 126754 0.66 0.986995
Target:  5'- aGC-CGCGC-CGaaGAGAgGGACAGCGa -3'
miRNA:   3'- aCGuGCGCGcGCg-CUUUaUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 2505 0.66 0.989912
Target:  5'- gGCcucGCGCGacuucaGCGCGGG--GGGCGACu -3'
miRNA:   3'- aCG---UGCGCg-----CGCGCUUuaUCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 45341 0.66 0.989912
Target:  5'- cGCGC-CGCGCcCGAGAcgAGGCGAa- -3'
miRNA:   3'- aCGUGcGCGCGcGCUUUa-UCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 134805 0.66 0.988525
Target:  5'- gGCGuCGCGCGCGcCGGA--AGACc--- -3'
miRNA:   3'- aCGU-GCGCGCGC-GCUUuaUCUGuugc -5'
24729 3' -52.1 NC_005264.1 + 126554 0.66 0.988525
Target:  5'- gGCucuuCGCGC-CGCGA---AGACGugGu -3'
miRNA:   3'- aCGu---GCGCGcGCGCUuuaUCUGUugC- -5'
24729 3' -52.1 NC_005264.1 + 14548 0.66 0.988525
Target:  5'- cGCACGCGCGCGgucuccaGAAucucccgccGGGCAAa- -3'
miRNA:   3'- aCGUGCGCGCGCg------CUUua-------UCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 48707 0.66 0.986995
Target:  5'- cGguCGCuCGCGgGAGAUgAGGCGGCc -3'
miRNA:   3'- aCguGCGcGCGCgCUUUA-UCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 19003 0.66 0.987625
Target:  5'- aUGgGCGUacccaaacaagauaaGCGgGCGuGAUGGACGGCa -3'
miRNA:   3'- -ACgUGCG---------------CGCgCGCuUUAUCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 152228 0.66 0.986995
Target:  5'- gGCACuuaauGCcuCGCGCGAuAUGGAUcGCGg -3'
miRNA:   3'- aCGUG-----CGc-GCGCGCUuUAUCUGuUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.