miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 3' -52.1 NC_005264.1 + 139568 1.09 0.007426
Target:  5'- cUGCACGCGCGCGCGAAAUAGACAACGu -3'
miRNA:   3'- -ACGUGCGCGCGCGCUUUAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 100197 0.72 0.808314
Target:  5'- cGguCGCGUGCuGCGcu-UGGACGGCGg -3'
miRNA:   3'- aCguGCGCGCG-CGCuuuAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 36546 0.72 0.825971
Target:  5'- gGC-CGCGCGCcCGAAAgcGGCAugGc -3'
miRNA:   3'- aCGuGCGCGCGcGCUUUauCUGUugC- -5'
24729 3' -52.1 NC_005264.1 + 13954 0.66 0.989912
Target:  5'- aUGcCACGCG-GCGaCGAGG-AGACgAGCGa -3'
miRNA:   3'- -AC-GUGCGCgCGC-GCUUUaUCUG-UUGC- -5'
24729 3' -52.1 NC_005264.1 + 144992 0.77 0.576451
Target:  5'- cGCGgucgaacaGCGCGCGCGAGAUGGAgGAUc -3'
miRNA:   3'- aCGUg-------CGCGCGCGCUUUAUCUgUUGc -5'
24729 3' -52.1 NC_005264.1 + 45769 0.77 0.586814
Target:  5'- cUGCGCGgGgCGCGCGGAGUGGGgAGuCGa -3'
miRNA:   3'- -ACGUGCgC-GCGCGCUUUAUCUgUU-GC- -5'
24729 3' -52.1 NC_005264.1 + 73887 0.75 0.680673
Target:  5'- gUGCuAUGCGCGCGaCGAGAaAGACGuCGa -3'
miRNA:   3'- -ACG-UGCGCGCGC-GCUUUaUCUGUuGC- -5'
24729 3' -52.1 NC_005264.1 + 78958 0.74 0.71153
Target:  5'- gGCAgGUGUGCGCGAAGUucGGCA-CGg -3'
miRNA:   3'- aCGUgCGCGCGCGCUUUAu-CUGUuGC- -5'
24729 3' -52.1 NC_005264.1 + 54203 0.74 0.741751
Target:  5'- gGUACGauuGCGCGgGGGAUacGGACGGCGg -3'
miRNA:   3'- aCGUGCg--CGCGCgCUUUA--UCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 49589 0.73 0.799231
Target:  5'- cGCACGC-CGCcgGCGAccaGGACGACGg -3'
miRNA:   3'- aCGUGCGcGCG--CGCUuuaUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 88949 0.73 0.761415
Target:  5'- gGCACGCcUGCuGCGAGAgucGGCGACGg -3'
miRNA:   3'- aCGUGCGcGCG-CGCUUUau-CUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 28413 0.74 0.741751
Target:  5'- gGUAUGCGUGuCGCGggGUAGGaccgAACGg -3'
miRNA:   3'- aCGUGCGCGC-GCGCuuUAUCUg---UUGC- -5'
24729 3' -52.1 NC_005264.1 + 50565 0.78 0.515373
Target:  5'- gGCGCGCGCGUGCGGGA-AGcgcacGCGGCGc -3'
miRNA:   3'- aCGUGCGCGCGCGCUUUaUC-----UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 149885 0.73 0.761415
Target:  5'- gGCgGCGCGC-CGCccGGUAGGCAACGg -3'
miRNA:   3'- aCG-UGCGCGcGCGcuUUAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 121915 0.77 0.545638
Target:  5'- gGCGCgGCGCG-GCGggGaGGGCGACGg -3'
miRNA:   3'- aCGUG-CGCGCgCGCuuUaUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 156688 0.74 0.71153
Target:  5'- gUGCACGCGaUGCGCGAc--GGGCGcGCGg -3'
miRNA:   3'- -ACGUGCGC-GCGCGCUuuaUCUGU-UGC- -5'
24729 3' -52.1 NC_005264.1 + 127110 0.73 0.78999
Target:  5'- gGCACGgGCG-GCGuAAAcagGGACAACGa -3'
miRNA:   3'- aCGUGCgCGCgCGC-UUUa--UCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 77001 0.72 0.820748
Target:  5'- gUGCGCGCaagacccgguacugaGCGCGCGcuucuuGGUcacAGACAGCGa -3'
miRNA:   3'- -ACGUGCG---------------CGCGCGCu-----UUA---UCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 57500 0.77 0.576451
Target:  5'- aUGCugGCGCGCGCGgcGgcGAgAGCu -3'
miRNA:   3'- -ACGugCGCGCGCGCuuUauCUgUUGc -5'
24729 3' -52.1 NC_005264.1 + 20221 0.75 0.670292
Target:  5'- gGCACGCauguggccccGCGCGUGAcgGGUGGGCAGgGg -3'
miRNA:   3'- aCGUGCG----------CGCGCGCU--UUAUCUGUUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.