miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 3' -52.1 NC_005264.1 + 702 0.69 0.925965
Target:  5'- gGCAcCGCGCGUaCGAGAgAGACAGa- -3'
miRNA:   3'- aCGU-GCGCGCGcGCUUUaUCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 1137 0.66 0.981453
Target:  5'- gUGCAUGCGgGgguCGCGAAAUAuuuGGCAAa- -3'
miRNA:   3'- -ACGUGCGCgC---GCGCUUUAU---CUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 1171 0.69 0.941279
Target:  5'- cUGC-CG-GCGCGCGAugggGGUAcGCAGCGg -3'
miRNA:   3'- -ACGuGCgCGCGCGCU----UUAUcUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 2505 0.66 0.989912
Target:  5'- gGCcucGCGCGacuucaGCGCGGG--GGGCGACu -3'
miRNA:   3'- aCG---UGCGCg-----CGCGCUUuaUCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 2889 0.77 0.545638
Target:  5'- gGCGCgGCGCG-GCGggGaGGGCGACGg -3'
miRNA:   3'- aCGUG-CGCGCgCGCuuUaUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 4086 0.66 0.983467
Target:  5'- uUGCACGgGCG-GCGucgcGGcACGACGg -3'
miRNA:   3'- -ACGUGCgCGCgCGCuuuaUC-UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 4262 0.7 0.920362
Target:  5'- gGCuuGC-CGCGCGGGAaccgcgGGGCGGCGg -3'
miRNA:   3'- aCGugCGcGCGCGCUUUa-----UCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 4325 0.68 0.963312
Target:  5'- gGCAgGUGCGCgaaagguagcuuaucGCGAuaGAUAGuCGGCGg -3'
miRNA:   3'- aCGUgCGCGCG---------------CGCU--UUAUCuGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 8083 0.73 0.78999
Target:  5'- gGCACGgGCG-GCGuAAAcagGGACAACGa -3'
miRNA:   3'- aCGUGCgCGCgCGC-UUUa--UCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 12108 0.71 0.874281
Target:  5'- aGUACGCcccGCGCGCGAccuuuGGcGGGCAGCc -3'
miRNA:   3'- aCGUGCG---CGCGCGCU-----UUaUCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 12969 0.68 0.954376
Target:  5'- gGCGCGCGC-CGCcGAc---GACGACGc -3'
miRNA:   3'- aCGUGCGCGcGCG-CUuuauCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 13954 0.66 0.989912
Target:  5'- aUGcCACGCG-GCGaCGAGG-AGACgAGCGa -3'
miRNA:   3'- -AC-GUGCGCgCGC-GCUUUaUCUG-UUGC- -5'
24729 3' -52.1 NC_005264.1 + 14548 0.66 0.988525
Target:  5'- cGCACGCGCGCGgucuccaGAAucucccgccGGGCAAa- -3'
miRNA:   3'- aCGUGCGCGCGCg------CUUua-------UCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 15762 0.66 0.988525
Target:  5'- gUGCGCGCGaGCGUGGcuccGGGCGAg- -3'
miRNA:   3'- -ACGUGCGCgCGCGCUuua-UCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 16511 0.66 0.981453
Target:  5'- gGCGCGCaCGC-CGAGAgucaGGAUAGCu -3'
miRNA:   3'- aCGUGCGcGCGcGCUUUa---UCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 16542 0.71 0.881577
Target:  5'- aGCGCuuGCGCGUauuucaGCGcgGUGGGCGGCGc -3'
miRNA:   3'- aCGUG--CGCGCG------CGCuuUAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 16768 0.66 0.981453
Target:  5'- cGCGCGgGgGCGCGcuGUucGGGCcgGACGc -3'
miRNA:   3'- aCGUGCgCgCGCGCuuUA--UCUG--UUGC- -5'
24729 3' -52.1 NC_005264.1 + 18037 0.66 0.983467
Target:  5'- aGUGCGUGcCGaCGCGAAGc-GGCGGCGc -3'
miRNA:   3'- aCGUGCGC-GC-GCGCUUUauCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 18942 0.69 0.931319
Target:  5'- aUGCGucaGCGCagauGgGCGAAAUGGGCcGCGg -3'
miRNA:   3'- -ACGUg--CGCG----CgCGCUUUAUCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 19003 0.66 0.987625
Target:  5'- aUGgGCGUacccaaacaagauaaGCGgGCGuGAUGGACGGCa -3'
miRNA:   3'- -ACgUGCG---------------CGCgCGCuUUAUCUGUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.