miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 3' -52.1 NC_005264.1 + 139568 1.09 0.007426
Target:  5'- cUGCACGCGCGCGCGAAAUAGACAACGu -3'
miRNA:   3'- -ACGUGCGCGCGCGCUUUAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 155264 0.81 0.352253
Target:  5'- cGCA-GCG-GCGCGggGUAGGCGGCGg -3'
miRNA:   3'- aCGUgCGCgCGCGCuuUAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 50565 0.78 0.515373
Target:  5'- gGCGCGCGCGUGCGGGA-AGcgcacGCGGCGc -3'
miRNA:   3'- aCGUGCGCGCGCGCUUUaUC-----UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 2889 0.77 0.545638
Target:  5'- gGCGCgGCGCG-GCGggGaGGGCGACGg -3'
miRNA:   3'- aCGUG-CGCGCgCGCuuUaUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 100936 0.77 0.545638
Target:  5'- aGCGCGCGC-CGUGA--UAGACGGCa -3'
miRNA:   3'- aCGUGCGCGcGCGCUuuAUCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 121915 0.77 0.545638
Target:  5'- gGCGCgGCGCG-GCGggGaGGGCGACGg -3'
miRNA:   3'- aCGUG-CGCGCgCGCuuUaUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 144992 0.77 0.576451
Target:  5'- cGCGgucgaacaGCGCGCGCGAGAUGGAgGAUc -3'
miRNA:   3'- aCGUg-------CGCGCGCGCUUUAUCUgUUGc -5'
24729 3' -52.1 NC_005264.1 + 57500 0.77 0.576451
Target:  5'- aUGCugGCGCGCGCGgcGgcGAgAGCu -3'
miRNA:   3'- -ACGugCGCGCGCGCuuUauCUgUUGc -5'
24729 3' -52.1 NC_005264.1 + 45769 0.77 0.586814
Target:  5'- cUGCGCGgGgCGCGCGGAGUGGGgAGuCGa -3'
miRNA:   3'- -ACGUGCgC-GCGCGCUUUAUCUgUU-GC- -5'
24729 3' -52.1 NC_005264.1 + 159744 0.75 0.670292
Target:  5'- cUGCGCGCGaugGCaGaCGAAGUGGugGACGa -3'
miRNA:   3'- -ACGUGCGCg--CG-C-GCUUUAUCugUUGC- -5'
24729 3' -52.1 NC_005264.1 + 20221 0.75 0.670292
Target:  5'- gGCACGCauguggccccGCGCGUGAcgGGUGGGCAGgGg -3'
miRNA:   3'- aCGUGCG----------CGCGCGCU--UUAUCUGUUgC- -5'
24729 3' -52.1 NC_005264.1 + 73887 0.75 0.680673
Target:  5'- gUGCuAUGCGCGCGaCGAGAaAGACGuCGa -3'
miRNA:   3'- -ACG-UGCGCGCGC-GCUUUaUCUGUuGC- -5'
24729 3' -52.1 NC_005264.1 + 56927 0.75 0.691013
Target:  5'- cGUACGUGCGUgGCGcAcgGGGCGACGg -3'
miRNA:   3'- aCGUGCGCGCG-CGCuUuaUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 109854 0.75 0.701302
Target:  5'- uUGCcCGCGaGCGCGAgcuAGUGGACAgaGCGg -3'
miRNA:   3'- -ACGuGCGCgCGCGCU---UUAUCUGU--UGC- -5'
24729 3' -52.1 NC_005264.1 + 156688 0.74 0.71153
Target:  5'- gUGCACGCGaUGCGCGAc--GGGCGcGCGg -3'
miRNA:   3'- -ACGUGCGC-GCGCGCUuuaUCUGU-UGC- -5'
24729 3' -52.1 NC_005264.1 + 78958 0.74 0.71153
Target:  5'- gGCAgGUGUGCGCGAAGUucGGCA-CGg -3'
miRNA:   3'- aCGUgCGCGCGCGCUUUAu-CUGUuGC- -5'
24729 3' -52.1 NC_005264.1 + 37662 0.74 0.71153
Target:  5'- gUGCACGCGaUGCGCGAc--GGGCGcGCGg -3'
miRNA:   3'- -ACGUGCGC-GCGCGCUuuaUCUGU-UGC- -5'
24729 3' -52.1 NC_005264.1 + 131612 0.74 0.71153
Target:  5'- cGCGCguggGCGCGCGCGGAGaAGAacaGAUGg -3'
miRNA:   3'- aCGUG----CGCGCGCGCUUUaUCUg--UUGC- -5'
24729 3' -52.1 NC_005264.1 + 67260 0.74 0.731764
Target:  5'- cGCuaaaGCGCGCuGUGguAUAGACGACGc -3'
miRNA:   3'- aCGug--CGCGCG-CGCuuUAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 130265 0.74 0.741751
Target:  5'- gGCGCGgGUGCGCGAcGUugcGGCGGCu -3'
miRNA:   3'- aCGUGCgCGCGCGCUuUAu--CUGUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.