miRNA display CGI


Results 21 - 40 of 194 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 3' -52.1 NC_005264.1 + 19484 0.69 0.941279
Target:  5'- aUGCugACGCGCaccUGCGAGGUuccagcugccAGACGACGa -3'
miRNA:   3'- -ACG--UGCGCGc--GCGCUUUA----------UCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 20221 0.75 0.670292
Target:  5'- gGCACGCauguggccccGCGCGUGAcgGGUGGGCAGgGg -3'
miRNA:   3'- aCGUGCG----------CGCGCGCU--UUAUCUGUUgC- -5'
24729 3' -52.1 NC_005264.1 + 20818 0.68 0.958262
Target:  5'- aUGCACGCcaauCGCGCG-----GACGGCGa -3'
miRNA:   3'- -ACGUGCGc---GCGCGCuuuauCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 21261 0.69 0.936423
Target:  5'- gUGCGCGC-CGCG-GAGGUGG-UAACGc -3'
miRNA:   3'- -ACGUGCGcGCGCgCUUUAUCuGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 21720 0.69 0.931319
Target:  5'- gGC-CGUGCGCGCaGGAGUAGAgGu-- -3'
miRNA:   3'- aCGuGCGCGCGCG-CUUUAUCUgUugc -5'
24729 3' -52.1 NC_005264.1 + 21905 0.67 0.97926
Target:  5'- gGCG-GCGCGUGCGGucGUAGugcugucuuCAACGg -3'
miRNA:   3'- aCGUgCGCGCGCGCUu-UAUCu--------GUUGC- -5'
24729 3' -52.1 NC_005264.1 + 22141 0.7 0.902062
Target:  5'- aGCGCGaCGCGCGCcu--UAGAUuGCGc -3'
miRNA:   3'- aCGUGC-GCGCGCGcuuuAUCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 23219 0.67 0.974305
Target:  5'- gUGC-CGC-CGCGCGAGuuguUGGAUuACGu -3'
miRNA:   3'- -ACGuGCGcGCGCGCUUu---AUCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 23284 0.7 0.912705
Target:  5'- cGCGCGCGUGCaGCGAgcgcaaacaucgccAcgAGuGCGGCGg -3'
miRNA:   3'- aCGUGCGCGCG-CGCU--------------UuaUC-UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 25924 0.66 0.986995
Target:  5'- gGgGgGCGCuGUaGCGGAcgAGGCGACGa -3'
miRNA:   3'- aCgUgCGCG-CG-CGCUUuaUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 26792 0.68 0.953571
Target:  5'- cUGCACGCGgGCuuccacgaggaGAAGUGGGCcGCGc -3'
miRNA:   3'- -ACGUGCGCgCGcg---------CUUUAUCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 28046 0.7 0.900111
Target:  5'- cGCGCGCgacgccggguaaaaGCGCGCGGAAgcGAacACGg -3'
miRNA:   3'- aCGUGCG--------------CGCGCGCUUUauCUguUGC- -5'
24729 3' -52.1 NC_005264.1 + 28413 0.74 0.741751
Target:  5'- gGUAUGCGUGuCGCGggGUAGGaccgAACGg -3'
miRNA:   3'- aCGUGCGCGC-GCGCuuUAUCUg---UUGC- -5'
24729 3' -52.1 NC_005264.1 + 29283 0.66 0.983467
Target:  5'- cUGUGCGCGgGCGCGugccu--CGACGu -3'
miRNA:   3'- -ACGUGCGCgCGCGCuuuaucuGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 30404 0.66 0.983467
Target:  5'- cGguCGCGCGCcgguGCGGAG-AGcuGCGGCGg -3'
miRNA:   3'- aCguGCGCGCG----CGCUUUaUC--UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 30859 0.73 0.761415
Target:  5'- gGCgGCGCGC-CGCccGGUAGGCAACGg -3'
miRNA:   3'- aCG-UGCGCGcGCGcuUUAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 31839 0.72 0.842892
Target:  5'- cGUGC-CGCGCGCGGca-AGACAugGg -3'
miRNA:   3'- aCGUGcGCGCGCGCUuuaUCUGUugC- -5'
24729 3' -52.1 NC_005264.1 + 33508 0.69 0.925965
Target:  5'- gUGCGCGuCGCuGCGCccGGUAGGCGAg- -3'
miRNA:   3'- -ACGUGC-GCG-CGCGcuUUAUCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 34468 0.66 0.988525
Target:  5'- cGCACuauuuGCGCGCGCuuca-GGAgGACGu -3'
miRNA:   3'- aCGUG-----CGCGCGCGcuuuaUCUgUUGC- -5'
24729 3' -52.1 NC_005264.1 + 35042 0.66 0.986995
Target:  5'- gGCuCGCGCGaCGuCGucagccUAGACAACa -3'
miRNA:   3'- aCGuGCGCGC-GC-GCuuu---AUCUGUUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.