miRNA display CGI


Results 21 - 40 of 194 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 3' -52.1 NC_005264.1 + 104363 0.71 0.850249
Target:  5'- cGCAUGCGUuaaugucGCGCGGcaGAUAGGCuGGCGc -3'
miRNA:   3'- aCGUGCGCG-------CGCGCU--UUAUCUG-UUGC- -5'
24729 3' -52.1 NC_005264.1 + 36546 0.72 0.825971
Target:  5'- gGC-CGCGCGCcCGAAAgcGGCAugGc -3'
miRNA:   3'- aCGuGCGCGCGcGCUUUauCUGUugC- -5'
24729 3' -52.1 NC_005264.1 + 28413 0.74 0.741751
Target:  5'- gGUAUGCGUGuCGCGggGUAGGaccgAACGg -3'
miRNA:   3'- aCGUGCGCGC-GCGCuuUAUCUg---UUGC- -5'
24729 3' -52.1 NC_005264.1 + 57500 0.77 0.576451
Target:  5'- aUGCugGCGCGCGCGgcGgcGAgAGCu -3'
miRNA:   3'- -ACGugCGCGCGCGCuuUauCUgUUGc -5'
24729 3' -52.1 NC_005264.1 + 119729 0.69 0.925965
Target:  5'- gGCAcCGCGCGUaCGAGAgAGACAGa- -3'
miRNA:   3'- aCGU-GCGCGCGcGCUUUaUCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 16542 0.71 0.881577
Target:  5'- aGCGCuuGCGCGUauuucaGCGcgGUGGGCGGCGc -3'
miRNA:   3'- aCGUG--CGCGCG------CGCuuUAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 100197 0.72 0.808314
Target:  5'- cGguCGCGUGCuGCGcu-UGGACGGCGg -3'
miRNA:   3'- aCguGCGCGCG-CGCuuuAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 121915 0.77 0.545638
Target:  5'- gGCGCgGCGCG-GCGggGaGGGCGACGg -3'
miRNA:   3'- aCGUG-CGCGCgCGCuuUaUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 118312 0.71 0.874281
Target:  5'- aUGUACuCGCGCGCGucGUAGcgguacgaguacACGACGg -3'
miRNA:   3'- -ACGUGcGCGCGCGCuuUAUC------------UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 50565 0.78 0.515373
Target:  5'- gGCGCGCGCGUGCGGGA-AGcgcacGCGGCGc -3'
miRNA:   3'- aCGUGCGCGCGCGCUUUaUC-----UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 77001 0.72 0.820748
Target:  5'- gUGCGCGCaagacccgguacugaGCGCGCGcuucuuGGUcacAGACAGCGa -3'
miRNA:   3'- -ACGUGCG---------------CGCGCGCu-----UUA---UCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 112036 0.71 0.866757
Target:  5'- cUGCGCGCGCGC-CGAucc-GACAAg- -3'
miRNA:   3'- -ACGUGCGCGCGcGCUuuauCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 149885 0.73 0.761415
Target:  5'- gGCgGCGCGC-CGCccGGUAGGCAACGg -3'
miRNA:   3'- aCG-UGCGCGcGCGcuUUAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 54203 0.74 0.741751
Target:  5'- gGUACGauuGCGCGgGGGAUacGGACGGCGg -3'
miRNA:   3'- aCGUGCg--CGCGCgCUUUA--UCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 73887 0.75 0.680673
Target:  5'- gUGCuAUGCGCGCGaCGAGAaAGACGuCGa -3'
miRNA:   3'- -ACG-UGCGCGCGC-GCUUUaUCUGUuGC- -5'
24729 3' -52.1 NC_005264.1 + 144992 0.77 0.576451
Target:  5'- cGCGgucgaacaGCGCGCGCGAGAUGGAgGAUc -3'
miRNA:   3'- aCGUg-------CGCGCGCGCUUUAUCUgUUGc -5'
24729 3' -52.1 NC_005264.1 + 155238 0.69 0.931319
Target:  5'- cGCAUGCGCGCagaccagagcccGCGAGGUuuagGGGCGGa- -3'
miRNA:   3'- aCGUGCGCGCG------------CGCUUUA----UCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 54417 0.69 0.925965
Target:  5'- uUGCGCG-GCGCGCcGAcuaGGGCGugGg -3'
miRNA:   3'- -ACGUGCgCGCGCG-CUuuaUCUGUugC- -5'
24729 3' -52.1 NC_005264.1 + 22141 0.7 0.902062
Target:  5'- aGCGCGaCGCGCGCcu--UAGAUuGCGc -3'
miRNA:   3'- aCGUGC-GCGCGCGcuuuAUCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 162693 0.71 0.881577
Target:  5'- gGCGCGCuGCGCGCcGgcGUuaAGGCGGCc -3'
miRNA:   3'- aCGUGCG-CGCGCG-CuuUA--UCUGUUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.