Results 41 - 56 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24729 | 5' | -55.3 | NC_005264.1 | + | 92106 | 0.7 | 0.801895 |
Target: 5'- uUUCGUCG-CUGCGGCggcacacagCgCAGCGUucGGCg -3' miRNA: 3'- -AGGCAGCaGAUGCCGa--------G-GUUGCA--CCG- -5' |
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24729 | 5' | -55.3 | NC_005264.1 | + | 76079 | 0.7 | 0.801895 |
Target: 5'- gCCGcgagCGUCgACGGCUCU-ACG-GGCg -3' miRNA: 3'- aGGCa---GCAGaUGCCGAGGuUGCaCCG- -5' |
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24729 | 5' | -55.3 | NC_005264.1 | + | 12461 | 0.7 | 0.793006 |
Target: 5'- cCCGgcaggCGUCaGCGaGUUCUuGCGUGGCc -3' miRNA: 3'- aGGCa----GCAGaUGC-CGAGGuUGCACCG- -5' |
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24729 | 5' | -55.3 | NC_005264.1 | + | 131488 | 0.7 | 0.793006 |
Target: 5'- cCCGgcaggCGUCaGCGaGUUCUuGCGUGGCc -3' miRNA: 3'- aGGCa----GCAGaUGC-CGAGGuUGCACCG- -5' |
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24729 | 5' | -55.3 | NC_005264.1 | + | 6722 | 0.71 | 0.765523 |
Target: 5'- gUCCuagCGUC-GCGGUacUCCGcgGCGUGGCg -3' miRNA: 3'- -AGGca-GCAGaUGCCG--AGGU--UGCACCG- -5' |
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24729 | 5' | -55.3 | NC_005264.1 | + | 46446 | 0.71 | 0.756119 |
Target: 5'- -aCGUCGgcCUGCGGCUUUuGCGcGGCg -3' miRNA: 3'- agGCAGCa-GAUGCCGAGGuUGCaCCG- -5' |
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24729 | 5' | -55.3 | NC_005264.1 | + | 2858 | 0.72 | 0.697762 |
Target: 5'- gCCGUCGcccgCUGCGGCUgCGAuCGaccggGGCg -3' miRNA: 3'- aGGCAGCa---GAUGCCGAgGUU-GCa----CCG- -5' |
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24729 | 5' | -55.3 | NC_005264.1 | + | 121884 | 0.72 | 0.697762 |
Target: 5'- gCCGUCGcccgCUGCGGCUgCGAuCGaccggGGCg -3' miRNA: 3'- aGGCAGCa---GAUGCCGAgGUU-GCa----CCG- -5' |
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24729 | 5' | -55.3 | NC_005264.1 | + | 126542 | 0.73 | 0.617242 |
Target: 5'- gCC-UCGUCUACgGGCUCUucgcgccgcgaaGACGUGGUc -3' miRNA: 3'- aGGcAGCAGAUG-CCGAGG------------UUGCACCG- -5' |
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24729 | 5' | -55.3 | NC_005264.1 | + | 55855 | 0.75 | 0.527581 |
Target: 5'- aUCCaggCGUCUauGCGGCUCCuGGCGaUGGCc -3' miRNA: 3'- -AGGca-GCAGA--UGCCGAGG-UUGC-ACCG- -5' |
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24729 | 5' | -55.3 | NC_005264.1 | + | 126002 | 0.75 | 0.508246 |
Target: 5'- cUUCGUCGUCgcuguCGGuCUCCuccucGGCGUGGCc -3' miRNA: 3'- -AGGCAGCAGau---GCC-GAGG-----UUGCACCG- -5' |
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24729 | 5' | -55.3 | NC_005264.1 | + | 132566 | 0.76 | 0.483574 |
Target: 5'- gUUCGUCGUC-GCGGCcgcgcuacacuucggUgCAGCGUGGCa -3' miRNA: 3'- -AGGCAGCAGaUGCCG---------------AgGUUGCACCG- -5' |
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24729 | 5' | -55.3 | NC_005264.1 | + | 36917 | 0.76 | 0.47053 |
Target: 5'- cUCGUCGccUCUcUGGCUCCAGCG-GGCc -3' miRNA: 3'- aGGCAGC--AGAuGCCGAGGUUGCaCCG- -5' |
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24729 | 5' | -55.3 | NC_005264.1 | + | 6976 | 0.76 | 0.461322 |
Target: 5'- cUUCGUCGUCguguCGGuCUCCuccucGGCGUGGCc -3' miRNA: 3'- -AGGCAGCAGau--GCC-GAGG-----UUGCACCG- -5' |
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24729 | 5' | -55.3 | NC_005264.1 | + | 125659 | 0.78 | 0.366961 |
Target: 5'- gCCGUaaaaugCGUCUGCGGC-CCAGCGUGcuGCa -3' miRNA: 3'- aGGCA------GCAGAUGCCGaGGUUGCAC--CG- -5' |
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24729 | 5' | -55.3 | NC_005264.1 | + | 139602 | 1.11 | 0.003068 |
Target: 5'- cUCCGUCGUCUACGGCUCCAACGUGGCc -3' miRNA: 3'- -AGGCAGCAGAUGCCGAGGUUGCACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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