miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 5' -55.3 NC_005264.1 + 46954 0.67 0.929718
Target:  5'- cCCGacucCGUCUaGCGGCUCgCucaucGCGUGGg -3'
miRNA:   3'- aGGCa---GCAGA-UGCCGAG-Gu----UGCACCg -5'
24729 5' -55.3 NC_005264.1 + 54410 0.67 0.918993
Target:  5'- gUCGUUGUUgcGCGGCgcgCCGACuagGGCg -3'
miRNA:   3'- aGGCAGCAGa-UGCCGa--GGUUGca-CCG- -5'
24729 5' -55.3 NC_005264.1 + 55855 0.75 0.527581
Target:  5'- aUCCaggCGUCUauGCGGCUCCuGGCGaUGGCc -3'
miRNA:   3'- -AGGca-GCAGA--UGCCGAGG-UUGC-ACCG- -5'
24729 5' -55.3 NC_005264.1 + 56230 0.66 0.948379
Target:  5'- aCUGgcgagCGUCgcGCGGCUuuugUCGAgGUGGCg -3'
miRNA:   3'- aGGCa----GCAGa-UGCCGA----GGUUgCACCG- -5'
24729 5' -55.3 NC_005264.1 + 57071 0.66 0.95634
Target:  5'- gUCCGUCGUCaGCGGCg-------GGCg -3'
miRNA:   3'- -AGGCAGCAGaUGCCGagguugcaCCG- -5'
24729 5' -55.3 NC_005264.1 + 58000 0.67 0.929718
Target:  5'- gCCGUgGcUCaGCGGCcCCGGCGgacaGGCc -3'
miRNA:   3'- aGGCAgC-AGaUGCCGaGGUUGCa---CCG- -5'
24729 5' -55.3 NC_005264.1 + 59485 0.68 0.873517
Target:  5'- aCCGUCGUguacacgacuaCUuuguaGCGGCUCCAgucagaggugucgACcgGUGGCg -3'
miRNA:   3'- aGGCAGCA-----------GA-----UGCCGAGGU-------------UG--CACCG- -5'
24729 5' -55.3 NC_005264.1 + 62017 0.66 0.934731
Target:  5'- gCCGUCGUCccuguCGcGCUCUAGCaaGGUu -3'
miRNA:   3'- aGGCAGCAGau---GC-CGAGGUUGcaCCG- -5'
24729 5' -55.3 NC_005264.1 + 62495 0.66 0.94406
Target:  5'- -gCGUCcUCUACGGCgUCCAucagaucauCGuUGGCc -3'
miRNA:   3'- agGCAGcAGAUGCCG-AGGUu--------GC-ACCG- -5'
24729 5' -55.3 NC_005264.1 + 67951 0.66 0.952471
Target:  5'- cCCGgCGcCUGCGGCUCgAGaaaGGCu -3'
miRNA:   3'- aGGCaGCaGAUGCCGAGgUUgcaCCG- -5'
24729 5' -55.3 NC_005264.1 + 73053 0.69 0.851806
Target:  5'- gCCGgCGguaUGCGGC-CagaGACGUGGCg -3'
miRNA:   3'- aGGCaGCag-AUGCCGaGg--UUGCACCG- -5'
24729 5' -55.3 NC_005264.1 + 76079 0.7 0.801895
Target:  5'- gCCGcgagCGUCgACGGCUCU-ACG-GGCg -3'
miRNA:   3'- aGGCa---GCAGaUGCCGAGGuUGCaCCG- -5'
24729 5' -55.3 NC_005264.1 + 79921 0.66 0.943615
Target:  5'- gCCGaCGUCUGCGGCggacUCCAcucucaaAUGggaguuagGGCg -3'
miRNA:   3'- aGGCaGCAGAUGCCG----AGGU-------UGCa-------CCG- -5'
24729 5' -55.3 NC_005264.1 + 92106 0.7 0.801895
Target:  5'- uUUCGUCG-CUGCGGCggcacacagCgCAGCGUucGGCg -3'
miRNA:   3'- -AGGCAGCaGAUGCCGa--------G-GUUGCA--CCG- -5'
24729 5' -55.3 NC_005264.1 + 93164 0.67 0.929718
Target:  5'- aCCGUCGgg-GCGccGCUCCAGacugGGCg -3'
miRNA:   3'- aGGCAGCagaUGC--CGAGGUUgca-CCG- -5'
24729 5' -55.3 NC_005264.1 + 95442 0.67 0.901164
Target:  5'- gCCGUCGUggaauacgCUACcGCgCCGGCG-GGCg -3'
miRNA:   3'- aGGCAGCA--------GAUGcCGaGGUUGCaCCG- -5'
24729 5' -55.3 NC_005264.1 + 97460 0.66 0.95634
Target:  5'- cUCCGUCGcCUGCGaGaCUCUAccCGgcGGCg -3'
miRNA:   3'- -AGGCAGCaGAUGC-C-GAGGUu-GCa-CCG- -5'
24729 5' -55.3 NC_005264.1 + 102855 0.69 0.843933
Target:  5'- gCCGUC-UCgcucGCGGCcaCCGccGCGUGGCu -3'
miRNA:   3'- aGGCAGcAGa---UGCCGa-GGU--UGCACCG- -5'
24729 5' -55.3 NC_005264.1 + 114918 0.69 0.835872
Target:  5'- cUCCGUCGauaa-GGCUCCG-CG-GGCa -3'
miRNA:   3'- -AGGCAGCagaugCCGAGGUuGCaCCG- -5'
24729 5' -55.3 NC_005264.1 + 121676 0.67 0.915593
Target:  5'- cUCCGucUCGUCUACagaguccucuGGCcCCGACcgcgagggcagcgugGUGGCg -3'
miRNA:   3'- -AGGC--AGCAGAUG----------CCGaGGUUG---------------CACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.