miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 5' -55.3 NC_005264.1 + 2649 0.67 0.915593
Target:  5'- cUCCGucUCGUCUACagaguccucuGGCcCCGACcgcgagggcagcgugGUGGCg -3'
miRNA:   3'- -AGGC--AGCAGAUG----------CCGaGGUUG---------------CACCG- -5'
24729 5' -55.3 NC_005264.1 + 2858 0.72 0.697762
Target:  5'- gCCGUCGcccgCUGCGGCUgCGAuCGaccggGGCg -3'
miRNA:   3'- aGGCAGCa---GAUGCCGAgGUU-GCa----CCG- -5'
24729 5' -55.3 NC_005264.1 + 2921 0.66 0.952471
Target:  5'- gUCaCGcUUGgCUGCGaGCUCCAGCGUG-Cu -3'
miRNA:   3'- -AG-GC-AGCaGAUGC-CGAGGUUGCACcG- -5'
24729 5' -55.3 NC_005264.1 + 6722 0.71 0.765523
Target:  5'- gUCCuagCGUC-GCGGUacUCCGcgGCGUGGCg -3'
miRNA:   3'- -AGGca-GCAGaUGCCG--AGGU--UGCACCG- -5'
24729 5' -55.3 NC_005264.1 + 6976 0.76 0.461322
Target:  5'- cUUCGUCGUCguguCGGuCUCCuccucGGCGUGGCc -3'
miRNA:   3'- -AGGCAGCAGau--GCC-GAGG-----UUGCACCG- -5'
24729 5' -55.3 NC_005264.1 + 7410 0.67 0.907337
Target:  5'- gCCGUCGUCcauUGGUUCguGCGccgGGUg -3'
miRNA:   3'- aGGCAGCAGau-GCCGAGguUGCa--CCG- -5'
24729 5' -55.3 NC_005264.1 + 9604 0.66 0.952471
Target:  5'- cCCaugCGcCgaaGGCUCCGuaACGUGGCu -3'
miRNA:   3'- aGGca-GCaGaugCCGAGGU--UGCACCG- -5'
24729 5' -55.3 NC_005264.1 + 12461 0.7 0.793006
Target:  5'- cCCGgcaggCGUCaGCGaGUUCUuGCGUGGCc -3'
miRNA:   3'- aGGCa----GCAGaUGC-CGAGGuUGCACCG- -5'
24729 5' -55.3 NC_005264.1 + 16774 0.66 0.948379
Target:  5'- cCCGaUCGUCgccgGCGGuCUCU---GUGGCc -3'
miRNA:   3'- aGGC-AGCAGa---UGCC-GAGGuugCACCG- -5'
24729 5' -55.3 NC_005264.1 + 18159 0.67 0.901164
Target:  5'- aCUGUCGUCguCGGCgCCAcuguCGUGGg -3'
miRNA:   3'- aGGCAGCAGauGCCGaGGUu---GCACCg -5'
24729 5' -55.3 NC_005264.1 + 21237 0.69 0.851806
Target:  5'- uUCCG-CGUUgacgACGGCUCgAGUGUGcGCg -3'
miRNA:   3'- -AGGCaGCAGa---UGCCGAGgUUGCAC-CG- -5'
24729 5' -55.3 NC_005264.1 + 29588 0.7 0.810634
Target:  5'- cCUGuUUGcCUGCGGCUCCAgaucgaagcguaGCGcGGCg -3'
miRNA:   3'- aGGC-AGCaGAUGCCGAGGU------------UGCaCCG- -5'
24729 5' -55.3 NC_005264.1 + 30847 0.68 0.866962
Target:  5'- gUCGUCGUCggcgGCGGCgcgCCGccCGguaGGCa -3'
miRNA:   3'- aGGCAGCAGa---UGCCGa--GGUu-GCa--CCG- -5'
24729 5' -55.3 NC_005264.1 + 34272 0.66 0.952471
Target:  5'- aUCCG-CGUgCUGC-GCUCCGccgcggaaauauACGUGGg -3'
miRNA:   3'- -AGGCaGCA-GAUGcCGAGGU------------UGCACCg -5'
24729 5' -55.3 NC_005264.1 + 35747 0.69 0.859484
Target:  5'- cCCGUgccCGaCUGCGGC-CgCGACGUGGg -3'
miRNA:   3'- aGGCA---GCaGAUGCCGaG-GUUGCACCg -5'
24729 5' -55.3 NC_005264.1 + 36917 0.76 0.47053
Target:  5'- cUCGUCGccUCUcUGGCUCCAGCG-GGCc -3'
miRNA:   3'- aGGCAGC--AGAuGCCGAGGUUGCaCCG- -5'
24729 5' -55.3 NC_005264.1 + 39544 0.66 0.95634
Target:  5'- gCCGcCGcCccGCGGUUCCcGCGcGGCa -3'
miRNA:   3'- aGGCaGCaGa-UGCCGAGGuUGCaCCG- -5'
24729 5' -55.3 NC_005264.1 + 40535 0.66 0.935219
Target:  5'- cCCGUCGcccagggacguggcgCUGCGGCUCCuggAGCGacaGCa -3'
miRNA:   3'- aGGCAGCa--------------GAUGCCGAGG---UUGCac-CG- -5'
24729 5' -55.3 NC_005264.1 + 44898 0.68 0.88814
Target:  5'- gUCGUCGUCUGgGGCgggaggagagaUCCGGCGcaaGCg -3'
miRNA:   3'- aGGCAGCAGAUgCCG-----------AGGUUGCac-CG- -5'
24729 5' -55.3 NC_005264.1 + 46446 0.71 0.756119
Target:  5'- -aCGUCGgcCUGCGGCUUUuGCGcGGCg -3'
miRNA:   3'- agGCAGCa-GAUGCCGAGGuUGCaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.