miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 5' -55.3 NC_005264.1 + 139602 1.11 0.003068
Target:  5'- cUCCGUCGUCUACGGCUCCAACGUGGCc -3'
miRNA:   3'- -AGGCAGCAGAUGCCGAGGUUGCACCG- -5'
24729 5' -55.3 NC_005264.1 + 159562 0.66 0.935219
Target:  5'- cCCGUCGcccagggacguggcgCUGCGGCUCCuggAGCGacaGCa -3'
miRNA:   3'- aGGCAGCa--------------GAUGCCGAGG---UUGCac-CG- -5'
24729 5' -55.3 NC_005264.1 + 62495 0.66 0.94406
Target:  5'- -gCGUCcUCUACGGCgUCCAucagaucauCGuUGGCc -3'
miRNA:   3'- agGCAGcAGAUGCCG-AGGUu--------GC-ACCG- -5'
24729 5' -55.3 NC_005264.1 + 57071 0.66 0.95634
Target:  5'- gUCCGUCGUCaGCGGCg-------GGCg -3'
miRNA:   3'- -AGGCAGCAGaUGCCGagguugcaCCG- -5'
24729 5' -55.3 NC_005264.1 + 46446 0.71 0.756119
Target:  5'- -aCGUCGgcCUGCGGCUUUuGCGcGGCg -3'
miRNA:   3'- agGCAGCa-GAUGCCGAGGuUGCaCCG- -5'
24729 5' -55.3 NC_005264.1 + 6722 0.71 0.765523
Target:  5'- gUCCuagCGUC-GCGGUacUCCGcgGCGUGGCg -3'
miRNA:   3'- -AGGca-GCAGaUGCCG--AGGU--UGCACCG- -5'
24729 5' -55.3 NC_005264.1 + 92106 0.7 0.801895
Target:  5'- uUUCGUCG-CUGCGGCggcacacagCgCAGCGUucGGCg -3'
miRNA:   3'- -AGGCAGCaGAUGCCGa--------G-GUUGCA--CCG- -5'
24729 5' -55.3 NC_005264.1 + 29588 0.7 0.810634
Target:  5'- cCUGuUUGcCUGCGGCUCCAgaucgaagcguaGCGcGGCg -3'
miRNA:   3'- aGGC-AGCaGAUGCCGAGGU------------UGCaCCG- -5'
24729 5' -55.3 NC_005264.1 + 7410 0.67 0.907337
Target:  5'- gCCGUCGUCcauUGGUUCguGCGccgGGUg -3'
miRNA:   3'- aGGCAGCAGau-GCCGAGguUGCa--CCG- -5'
24729 5' -55.3 NC_005264.1 + 62017 0.66 0.934731
Target:  5'- gCCGUCGUCccuguCGcGCUCUAGCaaGGUu -3'
miRNA:   3'- aGGCAGCAGau---GC-CGAGGUUGcaCCG- -5'
24729 5' -55.3 NC_005264.1 + 54410 0.67 0.918993
Target:  5'- gUCGUUGUUgcGCGGCgcgCCGACuagGGCg -3'
miRNA:   3'- aGGCAGCAGa-UGCCGa--GGUUGca-CCG- -5'
24729 5' -55.3 NC_005264.1 + 149873 0.68 0.866962
Target:  5'- gUCGUCGUCggcgGCGGCgcgCCGccCGguaGGCa -3'
miRNA:   3'- aGGCAGCAGa---UGCCGa--GGUu-GCa--CCG- -5'
24729 5' -55.3 NC_005264.1 + 36917 0.76 0.47053
Target:  5'- cUCGUCGccUCUcUGGCUCCAGCG-GGCc -3'
miRNA:   3'- aGGCAGC--AGAuGCCGAGGUUGCaCCG- -5'
24729 5' -55.3 NC_005264.1 + 58000 0.67 0.929718
Target:  5'- gCCGUgGcUCaGCGGCcCCGGCGgacaGGCc -3'
miRNA:   3'- aGGCAgC-AGaUGCCGaGGUUGCa---CCG- -5'
24729 5' -55.3 NC_005264.1 + 126002 0.75 0.508246
Target:  5'- cUUCGUCGUCgcuguCGGuCUCCuccucGGCGUGGCc -3'
miRNA:   3'- -AGGCAGCAGau---GCC-GAGG-----UUGCACCG- -5'
24729 5' -55.3 NC_005264.1 + 154773 0.69 0.859484
Target:  5'- cCCGUgccCGaCUGCGGC-CgCGACGUGGg -3'
miRNA:   3'- aGGCA---GCaGAUGCCGaG-GUUGCACCg -5'
24729 5' -55.3 NC_005264.1 + 138515 0.66 0.934731
Target:  5'- gCCGUUcaCUGCGGCcccUUCAACGcucGGCa -3'
miRNA:   3'- aGGCAGcaGAUGCCG---AGGUUGCa--CCG- -5'
24729 5' -55.3 NC_005264.1 + 79921 0.66 0.943615
Target:  5'- gCCGaCGUCUGCGGCggacUCCAcucucaaAUGggaguuagGGCg -3'
miRNA:   3'- aGGCaGCAGAUGCCG----AGGU-------UGCa-------CCG- -5'
24729 5' -55.3 NC_005264.1 + 121884 0.72 0.697762
Target:  5'- gCCGUCGcccgCUGCGGCUgCGAuCGaccggGGCg -3'
miRNA:   3'- aGGCAGCa---GAUGCCGAgGUU-GCa----CCG- -5'
24729 5' -55.3 NC_005264.1 + 131488 0.7 0.793006
Target:  5'- cCCGgcaggCGUCaGCGaGUUCUuGCGUGGCc -3'
miRNA:   3'- aGGCa----GCAGaUGC-CGAGGuUGCACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.