miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 5' -55.3 NC_005264.1 + 139602 1.11 0.003068
Target:  5'- cUCCGUCGUCUACGGCUCCAACGUGGCc -3'
miRNA:   3'- -AGGCAGCAGAUGCCGAGGUUGCACCG- -5'
24729 5' -55.3 NC_005264.1 + 125659 0.78 0.366961
Target:  5'- gCCGUaaaaugCGUCUGCGGC-CCAGCGUGcuGCa -3'
miRNA:   3'- aGGCA------GCAGAUGCCGaGGUUGCAC--CG- -5'
24729 5' -55.3 NC_005264.1 + 6976 0.76 0.461322
Target:  5'- cUUCGUCGUCguguCGGuCUCCuccucGGCGUGGCc -3'
miRNA:   3'- -AGGCAGCAGau--GCC-GAGG-----UUGCACCG- -5'
24729 5' -55.3 NC_005264.1 + 36917 0.76 0.47053
Target:  5'- cUCGUCGccUCUcUGGCUCCAGCG-GGCc -3'
miRNA:   3'- aGGCAGC--AGAuGCCGAGGUUGCaCCG- -5'
24729 5' -55.3 NC_005264.1 + 132566 0.76 0.483574
Target:  5'- gUUCGUCGUC-GCGGCcgcgcuacacuucggUgCAGCGUGGCa -3'
miRNA:   3'- -AGGCAGCAGaUGCCG---------------AgGUUGCACCG- -5'
24729 5' -55.3 NC_005264.1 + 126002 0.75 0.508246
Target:  5'- cUUCGUCGUCgcuguCGGuCUCCuccucGGCGUGGCc -3'
miRNA:   3'- -AGGCAGCAGau---GCC-GAGG-----UUGCACCG- -5'
24729 5' -55.3 NC_005264.1 + 55855 0.75 0.527581
Target:  5'- aUCCaggCGUCUauGCGGCUCCuGGCGaUGGCc -3'
miRNA:   3'- -AGGca-GCAGA--UGCCGAGG-UUGC-ACCG- -5'
24729 5' -55.3 NC_005264.1 + 126542 0.73 0.617242
Target:  5'- gCC-UCGUCUACgGGCUCUucgcgccgcgaaGACGUGGUc -3'
miRNA:   3'- aGGcAGCAGAUG-CCGAGG------------UUGCACCG- -5'
24729 5' -55.3 NC_005264.1 + 121884 0.72 0.697762
Target:  5'- gCCGUCGcccgCUGCGGCUgCGAuCGaccggGGCg -3'
miRNA:   3'- aGGCAGCa---GAUGCCGAgGUU-GCa----CCG- -5'
24729 5' -55.3 NC_005264.1 + 2858 0.72 0.697762
Target:  5'- gCCGUCGcccgCUGCGGCUgCGAuCGaccggGGCg -3'
miRNA:   3'- aGGCAGCa---GAUGCCGAgGUU-GCa----CCG- -5'
24729 5' -55.3 NC_005264.1 + 46446 0.71 0.756119
Target:  5'- -aCGUCGgcCUGCGGCUUUuGCGcGGCg -3'
miRNA:   3'- agGCAGCa-GAUGCCGAGGuUGCaCCG- -5'
24729 5' -55.3 NC_005264.1 + 6722 0.71 0.765523
Target:  5'- gUCCuagCGUC-GCGGUacUCCGcgGCGUGGCg -3'
miRNA:   3'- -AGGca-GCAGaUGCCG--AGGU--UGCACCG- -5'
24729 5' -55.3 NC_005264.1 + 131488 0.7 0.793006
Target:  5'- cCCGgcaggCGUCaGCGaGUUCUuGCGUGGCc -3'
miRNA:   3'- aGGCa----GCAGaUGC-CGAGGuUGCACCG- -5'
24729 5' -55.3 NC_005264.1 + 12461 0.7 0.793006
Target:  5'- cCCGgcaggCGUCaGCGaGUUCUuGCGUGGCc -3'
miRNA:   3'- aGGCa----GCAGaUGC-CGAGGuUGCACCG- -5'
24729 5' -55.3 NC_005264.1 + 92106 0.7 0.801895
Target:  5'- uUUCGUCG-CUGCGGCggcacacagCgCAGCGUucGGCg -3'
miRNA:   3'- -AGGCAGCaGAUGCCGa--------G-GUUGCA--CCG- -5'
24729 5' -55.3 NC_005264.1 + 76079 0.7 0.801895
Target:  5'- gCCGcgagCGUCgACGGCUCU-ACG-GGCg -3'
miRNA:   3'- aGGCa---GCAGaUGCCGAGGuUGCaCCG- -5'
24729 5' -55.3 NC_005264.1 + 29588 0.7 0.810634
Target:  5'- cCUGuUUGcCUGCGGCUCCAgaucgaagcguaGCGcGGCg -3'
miRNA:   3'- aGGC-AGCaGAUGCCGAGGU------------UGCaCCG- -5'
24729 5' -55.3 NC_005264.1 + 114918 0.69 0.835872
Target:  5'- cUCCGUCGauaa-GGCUCCG-CG-GGCa -3'
miRNA:   3'- -AGGCAGCagaugCCGAGGUuGCaCCG- -5'
24729 5' -55.3 NC_005264.1 + 102855 0.69 0.843933
Target:  5'- gCCGUC-UCgcucGCGGCcaCCGccGCGUGGCu -3'
miRNA:   3'- aGGCAGcAGa---UGCCGa-GGU--UGCACCG- -5'
24729 5' -55.3 NC_005264.1 + 21237 0.69 0.851806
Target:  5'- uUCCG-CGUUgacgACGGCUCgAGUGUGcGCg -3'
miRNA:   3'- -AGGCaGCAGa---UGCCGAGgUUGCAC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.