miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 5' -55.3 NC_005264.1 + 138515 0.66 0.934731
Target:  5'- gCCGUUcaCUGCGGCcccUUCAACGcucGGCa -3'
miRNA:   3'- aGGCAGcaGAUGCCG---AGGUUGCa--CCG- -5'
24729 5' -55.3 NC_005264.1 + 9604 0.66 0.952471
Target:  5'- cCCaugCGcCgaaGGCUCCGuaACGUGGCu -3'
miRNA:   3'- aGGca-GCaGaugCCGAGGU--UGCACCG- -5'
24729 5' -55.3 NC_005264.1 + 158571 0.66 0.95634
Target:  5'- gCCGcCGcCccGCGGUUCCcGCGcGGCa -3'
miRNA:   3'- aGGCaGCaGa-UGCCGAGGuUGCaCCG- -5'
24729 5' -55.3 NC_005264.1 + 62017 0.66 0.934731
Target:  5'- gCCGUCGUCccuguCGcGCUCUAGCaaGGUu -3'
miRNA:   3'- aGGCAGCAGau---GC-CGAGGUUGcaCCG- -5'
24729 5' -55.3 NC_005264.1 + 62495 0.66 0.94406
Target:  5'- -gCGUCcUCUACGGCgUCCAucagaucauCGuUGGCc -3'
miRNA:   3'- agGCAGcAGAUGCCG-AGGUu--------GC-ACCG- -5'
24729 5' -55.3 NC_005264.1 + 67951 0.66 0.952471
Target:  5'- cCCGgCGcCUGCGGCUCgAGaaaGGCu -3'
miRNA:   3'- aGGCaGCaGAUGCCGAGgUUgcaCCG- -5'
24729 5' -55.3 NC_005264.1 + 54410 0.67 0.918993
Target:  5'- gUCGUUGUUgcGCGGCgcgCCGACuagGGCg -3'
miRNA:   3'- aGGCAGCAGa-UGCCGa--GGUUGca-CCG- -5'
24729 5' -55.3 NC_005264.1 + 159562 0.66 0.935219
Target:  5'- cCCGUCGcccagggacguggcgCUGCGGCUCCuggAGCGacaGCa -3'
miRNA:   3'- aGGCAGCa--------------GAUGCCGAGG---UUGCac-CG- -5'
24729 5' -55.3 NC_005264.1 + 125659 0.78 0.366961
Target:  5'- gCCGUaaaaugCGUCUGCGGC-CCAGCGUGcuGCa -3'
miRNA:   3'- aGGCA------GCAGAUGCCGaGGUUGCAC--CG- -5'
24729 5' -55.3 NC_005264.1 + 137284 0.66 0.952471
Target:  5'- uUCCGcggCGUUgGCGGCgacgCgGGCGUacGGCa -3'
miRNA:   3'- -AGGCa--GCAGaUGCCGa---GgUUGCA--CCG- -5'
24729 5' -55.3 NC_005264.1 + 30847 0.68 0.866962
Target:  5'- gUCGUCGUCggcgGCGGCgcgCCGccCGguaGGCa -3'
miRNA:   3'- aGGCAGCAGa---UGCCGa--GGUu-GCa--CCG- -5'
24729 5' -55.3 NC_005264.1 + 59485 0.68 0.873517
Target:  5'- aCCGUCGUguacacgacuaCUuuguaGCGGCUCCAgucagaggugucgACcgGUGGCg -3'
miRNA:   3'- aGGCAGCA-----------GA-----UGCCGAGGU-------------UG--CACCG- -5'
24729 5' -55.3 NC_005264.1 + 2858 0.72 0.697762
Target:  5'- gCCGUCGcccgCUGCGGCUgCGAuCGaccggGGCg -3'
miRNA:   3'- aGGCAGCa---GAUGCCGAgGUU-GCa----CCG- -5'
24729 5' -55.3 NC_005264.1 + 46954 0.67 0.929718
Target:  5'- cCCGacucCGUCUaGCGGCUCgCucaucGCGUGGg -3'
miRNA:   3'- aGGCa---GCAGA-UGCCGAG-Gu----UGCACCg -5'
24729 5' -55.3 NC_005264.1 + 126542 0.73 0.617242
Target:  5'- gCC-UCGUCUACgGGCUCUucgcgccgcgaaGACGUGGUc -3'
miRNA:   3'- aGGcAGCAGAUG-CCGAGG------------UUGCACCG- -5'
24729 5' -55.3 NC_005264.1 + 55855 0.75 0.527581
Target:  5'- aUCCaggCGUCUauGCGGCUCCuGGCGaUGGCc -3'
miRNA:   3'- -AGGca-GCAGA--UGCCGAGG-UUGC-ACCG- -5'
24729 5' -55.3 NC_005264.1 + 132566 0.76 0.483574
Target:  5'- gUUCGUCGUC-GCGGCcgcgcuacacuucggUgCAGCGUGGCa -3'
miRNA:   3'- -AGGCAGCAGaUGCCG---------------AgGUUGCACCG- -5'
24729 5' -55.3 NC_005264.1 + 93164 0.67 0.929718
Target:  5'- aCCGUCGgg-GCGccGCUCCAGacugGGCg -3'
miRNA:   3'- aGGCAGCagaUGC--CGAGGUUgca-CCG- -5'
24729 5' -55.3 NC_005264.1 + 6976 0.76 0.461322
Target:  5'- cUUCGUCGUCguguCGGuCUCCuccucGGCGUGGCc -3'
miRNA:   3'- -AGGCAGCAGau--GCC-GAGG-----UUGCACCG- -5'
24729 5' -55.3 NC_005264.1 + 44898 0.68 0.88814
Target:  5'- gUCGUCGUCUGgGGCgggaggagagaUCCGGCGcaaGCg -3'
miRNA:   3'- aGGCAGCAGAUgCCG-----------AGGUUGCac-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.