miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24730 5' -57.1 NC_005264.1 + 21752 0.66 0.904293
Target:  5'- uUCGGCGGCGGCCgucuUGaGCGCCGUa-- -3'
miRNA:   3'- uAGUUGCUGCUGG----GCcUGCGGCAguc -5'
24730 5' -57.1 NC_005264.1 + 17368 0.66 0.904293
Target:  5'- --uGGCGGCGGCgCGGucuguguacguGCGCCGUuCGGu -3'
miRNA:   3'- uagUUGCUGCUGgGCC-----------UGCGGCA-GUC- -5'
24730 5' -57.1 NC_005264.1 + 63591 0.66 0.904293
Target:  5'- cAUCGACGAUGGCUCugGGAUGUCGauUCGu -3'
miRNA:   3'- -UAGUUGCUGCUGGG--CCUGCGGC--AGUc -5'
24730 5' -57.1 NC_005264.1 + 146076 0.66 0.904293
Target:  5'- -cCGGCGACGAUCgGGACcucgcuaCCGUgAGg -3'
miRNA:   3'- uaGUUGCUGCUGGgCCUGc------GGCAgUC- -5'
24730 5' -57.1 NC_005264.1 + 66532 0.66 0.904293
Target:  5'- --uGACGACGACCgcguugCGGGCGUCGgCGa -3'
miRNA:   3'- uagUUGCUGCUGG------GCCUGCGGCaGUc -5'
24730 5' -57.1 NC_005264.1 + 152669 0.66 0.902442
Target:  5'- -cCGACGACaagauacucgccgaGGCCUGGACGCgGUgGa -3'
miRNA:   3'- uaGUUGCUG--------------CUGGGCCUGCGgCAgUc -5'
24730 5' -57.1 NC_005264.1 + 3811 0.66 0.898047
Target:  5'- gGUCcGCGAguucgGGCCCGGGCgggGCCG-CAGg -3'
miRNA:   3'- -UAGuUGCUg----CUGGGCCUG---CGGCaGUC- -5'
24730 5' -57.1 NC_005264.1 + 108910 0.66 0.898047
Target:  5'- cGUCAGCGACGAggaaCCCGagccgcGugGCUuUCAGc -3'
miRNA:   3'- -UAGUUGCUGCU----GGGC------CugCGGcAGUC- -5'
24730 5' -57.1 NC_005264.1 + 76913 0.66 0.898047
Target:  5'- --gGACGGUGGCCuCaGACGCgGUCAGa -3'
miRNA:   3'- uagUUGCUGCUGG-GcCUGCGgCAGUC- -5'
24730 5' -57.1 NC_005264.1 + 19181 0.66 0.898047
Target:  5'- --gGAUGAUGGCuCCGGGgcCGaCCGUCGGc -3'
miRNA:   3'- uagUUGCUGCUG-GGCCU--GC-GGCAGUC- -5'
24730 5' -57.1 NC_005264.1 + 122837 0.66 0.898047
Target:  5'- gGUCcGCGAguucgGGCCCGGGCgggGCCG-CAGg -3'
miRNA:   3'- -UAGuUGCUg----CUGGGCCUG---CGGCaGUC- -5'
24730 5' -57.1 NC_005264.1 + 98640 0.66 0.898047
Target:  5'- uGUC-ACuuCGACCCGGACGUCagacgaacgguGUCGGc -3'
miRNA:   3'- -UAGuUGcuGCUGGGCCUGCGG-----------CAGUC- -5'
24730 5' -57.1 NC_005264.1 + 117994 0.66 0.891578
Target:  5'- cUCGACGGC-ACCCGGAcggacacuuCGCCGa--- -3'
miRNA:   3'- uAGUUGCUGcUGGGCCU---------GCGGCaguc -5'
24730 5' -57.1 NC_005264.1 + 157295 0.66 0.891578
Target:  5'- uGUCggUGACGucaguCCCGGACGgCGgCGa -3'
miRNA:   3'- -UAGuuGCUGCu----GGGCCUGCgGCaGUc -5'
24730 5' -57.1 NC_005264.1 + 122111 0.66 0.891578
Target:  5'- --uGGCGGCGGCCgaGGAC-CCGuUCGGg -3'
miRNA:   3'- uagUUGCUGCUGGg-CCUGcGGC-AGUC- -5'
24730 5' -57.1 NC_005264.1 + 38268 0.66 0.891578
Target:  5'- uGUCggUGACGucaguCCCGGACGgCGgCGa -3'
miRNA:   3'- -UAGuuGCUGCu----GGGCCUGCgGCaGUc -5'
24730 5' -57.1 NC_005264.1 + 3084 0.66 0.891578
Target:  5'- --uGGCGGCGGCCgaGGAC-CCGuUCGGg -3'
miRNA:   3'- uagUUGCUGCUGGg-CCUGcGGC-AGUC- -5'
24730 5' -57.1 NC_005264.1 + 155442 0.66 0.884889
Target:  5'- aAUgGACGACGGCgCCGGG-GCCG-CGa -3'
miRNA:   3'- -UAgUUGCUGCUG-GGCCUgCGGCaGUc -5'
24730 5' -57.1 NC_005264.1 + 108463 0.66 0.877985
Target:  5'- uAUCcgcGCGGgGAUCCGGugGCCGcgCGa -3'
miRNA:   3'- -UAGu--UGCUgCUGGGCCugCGGCa-GUc -5'
24730 5' -57.1 NC_005264.1 + 95130 0.66 0.877985
Target:  5'- gAUCAAUucggaaauacgGACGGCCCGGGCGCa----- -3'
miRNA:   3'- -UAGUUG-----------CUGCUGGGCCUGCGgcaguc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.