miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 3' -58.1 NC_005264.1 + 145088 0.68 0.714451
Target:  5'- gCUCUcCUUGCCGCGaacuuggcauagguUGCGCCGCGGc- -3'
miRNA:   3'- -GAGGuGAACGGCGC--------------GUGCGGUGUCua -5'
24731 3' -58.1 NC_005264.1 + 52943 0.68 0.707495
Target:  5'- -gCCGCgcccGCgGCGCauuGCGCCGCGGGg -3'
miRNA:   3'- gaGGUGaa--CGgCGCG---UGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 33791 0.68 0.697505
Target:  5'- -aUCGa--GCCGCGCACGCCGCuuuGGAc -3'
miRNA:   3'- gaGGUgaaCGGCGCGUGCGGUG---UCUa -5'
24731 3' -58.1 NC_005264.1 + 56313 0.68 0.68746
Target:  5'- aCUCCGCg-GCCGCGC-UGCCGCc--- -3'
miRNA:   3'- -GAGGUGaaCGGCGCGuGCGGUGucua -5'
24731 3' -58.1 NC_005264.1 + 40806 0.68 0.67737
Target:  5'- -gCCGCUUGCCGCGgGguCGCCG-AGAc -3'
miRNA:   3'- gaGGUGAACGGCGCgU--GCGGUgUCUa -5'
24731 3' -58.1 NC_005264.1 + 141756 0.69 0.667243
Target:  5'- gCUCCACgaUGCCG---ACGCCGCGGAa -3'
miRNA:   3'- -GAGGUGa-ACGGCgcgUGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 42267 0.69 0.657087
Target:  5'- -cCCGCcuaUUGCCgGCGCggucaACGCCGCGGGg -3'
miRNA:   3'- gaGGUG---AACGG-CGCG-----UGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 161294 0.69 0.657087
Target:  5'- -cCCGCcuaUUGCCgGCGCggucaACGCCGCGGGg -3'
miRNA:   3'- gaGGUG---AACGG-CGCG-----UGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 25555 0.69 0.646913
Target:  5'- -cCCGCgucGCCGCcaACGCCGCGGAa -3'
miRNA:   3'- gaGGUGaa-CGGCGcgUGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 21237 0.69 0.636726
Target:  5'- uUCCGCguugacgacgGCUcgaguGUGCGCGCCGCGGAg -3'
miRNA:   3'- gAGGUGaa--------CGG-----CGCGUGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 123023 0.69 0.636726
Target:  5'- gCUCCAuCUaggcggaugcgUGCCGCGCAuCGCCAacgAGAc -3'
miRNA:   3'- -GAGGU-GA-----------ACGGCGCGU-GCGGUg--UCUa -5'
24731 3' -58.1 NC_005264.1 + 105339 0.69 0.636726
Target:  5'- gCUCuCGCc-GCCGCGCGCGCCAgCAu-- -3'
miRNA:   3'- -GAG-GUGaaCGGCGCGUGCGGU-GUcua -5'
24731 3' -58.1 NC_005264.1 + 150858 0.7 0.596021
Target:  5'- aCUCUGCcgUGCCGCGCGCGgCA-AGAc -3'
miRNA:   3'- -GAGGUGa-ACGGCGCGUGCgGUgUCUa -5'
24731 3' -58.1 NC_005264.1 + 33242 0.7 0.596021
Target:  5'- gCUUCGCc-GCCGCGCcgcaGCGCCuGCAGAg -3'
miRNA:   3'- -GAGGUGaaCGGCGCG----UGCGG-UGUCUa -5'
24731 3' -58.1 NC_005264.1 + 31832 0.7 0.596021
Target:  5'- aCUCUGCcgUGCCGCGCGCGgCA-AGAc -3'
miRNA:   3'- -GAGGUGa-ACGGCGCGUGCgGUgUCUa -5'
24731 3' -58.1 NC_005264.1 + 137132 0.7 0.575797
Target:  5'- -aCCGC-UGCCGCcCGCGCCAaAGAUg -3'
miRNA:   3'- gaGGUGaACGGCGcGUGCGGUgUCUA- -5'
24731 3' -58.1 NC_005264.1 + 64514 0.7 0.555731
Target:  5'- -aCCGCgcuguucUGuCCGCGC-CGCCGCGGAg -3'
miRNA:   3'- gaGGUGa------AC-GGCGCGuGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 5007 0.71 0.535874
Target:  5'- gUCCGC--GCCGgGguCGCCGCGGAg -3'
miRNA:   3'- gAGGUGaaCGGCgCguGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 124034 0.71 0.535874
Target:  5'- gUCCGC--GCCGgGguCGCCGCGGAg -3'
miRNA:   3'- gAGGUGaaCGGCgCguGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 159527 0.72 0.48743
Target:  5'- gCUCCGCUUGCacgGCGCGCGaucCCGCGcGAg -3'
miRNA:   3'- -GAGGUGAACGg--CGCGUGC---GGUGU-CUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.