miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 3' -58.1 NC_005264.1 + 33242 0.7 0.596021
Target:  5'- gCUUCGCc-GCCGCGCcgcaGCGCCuGCAGAg -3'
miRNA:   3'- -GAGGUGaaCGGCGCG----UGCGG-UGUCUa -5'
24731 3' -58.1 NC_005264.1 + 33791 0.68 0.697505
Target:  5'- -aUCGa--GCCGCGCACGCCGCuuuGGAc -3'
miRNA:   3'- gaGGUgaaCGGCGCGUGCGGUG---UCUa -5'
24731 3' -58.1 NC_005264.1 + 34272 0.8 0.170467
Target:  5'- aUCCGCgUGCUGCGCucCGCCGCGGAa -3'
miRNA:   3'- gAGGUGaACGGCGCGu-GCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 40806 0.68 0.67737
Target:  5'- -gCCGCUUGCCGCGgGguCGCCG-AGAc -3'
miRNA:   3'- gaGGUGAACGGCGCgU--GCGGUgUCUa -5'
24731 3' -58.1 NC_005264.1 + 42267 0.69 0.657087
Target:  5'- -cCCGCcuaUUGCCgGCGCggucaACGCCGCGGGg -3'
miRNA:   3'- gaGGUG---AACGG-CGCG-----UGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 44794 0.66 0.811221
Target:  5'- -gCCGac-GCCGCGguCGCCGCGGc- -3'
miRNA:   3'- gaGGUgaaCGGCGCguGCGGUGUCua -5'
24731 3' -58.1 NC_005264.1 + 46551 0.66 0.828324
Target:  5'- -gCCACagccguaGCCGCcCGCGCCACGGc- -3'
miRNA:   3'- gaGGUGaa-----CGGCGcGUGCGGUGUCua -5'
24731 3' -58.1 NC_005264.1 + 48695 0.66 0.811221
Target:  5'- gUCUGCUcGUCGCGguCGCuCGCGGGa -3'
miRNA:   3'- gAGGUGAaCGGCGCguGCG-GUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 52800 0.72 0.441152
Target:  5'- -gUCGCUUGCCGCGC-CGCUGCAa-- -3'
miRNA:   3'- gaGGUGAACGGCGCGuGCGGUGUcua -5'
24731 3' -58.1 NC_005264.1 + 52943 0.68 0.707495
Target:  5'- -gCCGCgcccGCgGCGCauuGCGCCGCGGGg -3'
miRNA:   3'- gaGGUGaa--CGgCGCG---UGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 53019 0.66 0.793473
Target:  5'- cCUCCGCaaccUGCa-CGCACGUCAUGGAa -3'
miRNA:   3'- -GAGGUGa---ACGgcGCGUGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 56130 0.66 0.793473
Target:  5'- -aCCACUaggcgcgcgagUGUCGCGUugGCCGCu--- -3'
miRNA:   3'- gaGGUGA-----------ACGGCGCGugCGGUGucua -5'
24731 3' -58.1 NC_005264.1 + 56313 0.68 0.68746
Target:  5'- aCUCCGCg-GCCGCGC-UGCCGCc--- -3'
miRNA:   3'- -GAGGUGaaCGGCGCGuGCGGUGucua -5'
24731 3' -58.1 NC_005264.1 + 56744 0.67 0.775149
Target:  5'- uUCCGCggagGCCGagauuggcaCGCACGCCAagcaaGGAa -3'
miRNA:   3'- gAGGUGaa--CGGC---------GCGUGCGGUg----UCUa -5'
24731 3' -58.1 NC_005264.1 + 58742 0.66 0.811221
Target:  5'- aUCCGCg-GCCGcCGCuGCGCUAuCAGAg -3'
miRNA:   3'- gAGGUGaaCGGC-GCG-UGCGGU-GUCUa -5'
24731 3' -58.1 NC_005264.1 + 59123 0.72 0.48743
Target:  5'- -gCCGCUgaUGCCGCGC-CGCCGCu--- -3'
miRNA:   3'- gaGGUGA--ACGGCGCGuGCGGUGucua -5'
24731 3' -58.1 NC_005264.1 + 59788 0.75 0.333635
Target:  5'- gUCCACg-GCCGUGUcCGCCGCGGAg -3'
miRNA:   3'- gAGGUGaaCGGCGCGuGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 61801 0.66 0.811221
Target:  5'- gCUCCACcggGCCGCggGCAuCGCCggGCAGu- -3'
miRNA:   3'- -GAGGUGaa-CGGCG--CGU-GCGG--UGUCua -5'
24731 3' -58.1 NC_005264.1 + 64514 0.7 0.555731
Target:  5'- -aCCGCgcuguucUGuCCGCGC-CGCCGCGGAg -3'
miRNA:   3'- gaGGUGa------AC-GGCGCGuGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 76401 0.73 0.405983
Target:  5'- uCUCCAUUaUGCCGUGCgcgauuggguGCGCCACGGu- -3'
miRNA:   3'- -GAGGUGA-ACGGCGCG----------UGCGGUGUCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.