miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 3' -58.1 NC_005264.1 + 228 0.66 0.793473
Target:  5'- -aUCGCUUuCCGUGCcugGCGCCACAGc- -3'
miRNA:   3'- gaGGUGAAcGGCGCG---UGCGGUGUCua -5'
24731 3' -58.1 NC_005264.1 + 3483 0.73 0.39747
Target:  5'- ---gGCUUGCCGcCGCACGCgGCGGGg -3'
miRNA:   3'- gaggUGAACGGC-GCGUGCGgUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 3754 0.66 0.828324
Target:  5'- -gCCuCUUGCCGCcgGgGCGCUGCGGGc -3'
miRNA:   3'- gaGGuGAACGGCG--CgUGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 4143 0.72 0.459372
Target:  5'- -gCCGCUUGUCGCGaugcuugccgccCACGCCGCGGu- -3'
miRNA:   3'- gaGGUGAACGGCGC------------GUGCGGUGUCua -5'
24731 3' -58.1 NC_005264.1 + 4257 0.73 0.41461
Target:  5'- gUCCcgGCUUGCCGCGCGgGaaCCGCGGGg -3'
miRNA:   3'- gAGG--UGAACGGCGCGUgC--GGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 5007 0.71 0.535874
Target:  5'- gUCCGC--GCCGgGguCGCCGCGGAg -3'
miRNA:   3'- gAGGUGaaCGGCgCguGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 6889 0.66 0.802423
Target:  5'- gUCCGCgaGCCGCGCAgucccaGCgCGCGGc- -3'
miRNA:   3'- gAGGUGaaCGGCGCGUg-----CG-GUGUCua -5'
24731 3' -58.1 NC_005264.1 + 9008 0.66 0.784379
Target:  5'- -aCCACUcGaCGCGCAUGaCACGGAUg -3'
miRNA:   3'- gaGGUGAaCgGCGCGUGCgGUGUCUA- -5'
24731 3' -58.1 NC_005264.1 + 11974 0.74 0.37263
Target:  5'- -gCCAuguCUUGCCGCGCGCGgCACGGc- -3'
miRNA:   3'- gaGGU---GAACGGCGCGUGCgGUGUCua -5'
24731 3' -58.1 NC_005264.1 + 12959 0.68 0.717422
Target:  5'- -cCUACcggGCgGCGCGCGCCGCcGAc -3'
miRNA:   3'- gaGGUGaa-CGgCGCGUGCGGUGuCUa -5'
24731 3' -58.1 NC_005264.1 + 21237 0.69 0.636726
Target:  5'- uUCCGCguugacgacgGCUcgaguGUGCGCGCCGCGGAg -3'
miRNA:   3'- gAGGUGaa--------CGG-----CGCGUGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 24336 0.66 0.828324
Target:  5'- uCUUCGCgagUGaaauCGCGCGgcaacCGCCGCAGGUa -3'
miRNA:   3'- -GAGGUGa--ACg---GCGCGU-----GCGGUGUCUA- -5'
24731 3' -58.1 NC_005264.1 + 25555 0.69 0.646913
Target:  5'- -cCCGCgucGCCGCcaACGCCGCGGAa -3'
miRNA:   3'- gaGGUGaa-CGGCGcgUGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 25555 0.66 0.828324
Target:  5'- --gCGCUUGUCGCGCuCGUC-CAGGg -3'
miRNA:   3'- gagGUGAACGGCGCGuGCGGuGUCUa -5'
24731 3' -58.1 NC_005264.1 + 27038 0.66 0.819857
Target:  5'- uCUCCACUgugGaaaCGCGUAgCGCCACccAGGc -3'
miRNA:   3'- -GAGGUGAa--Cg--GCGCGU-GCGGUG--UCUa -5'
24731 3' -58.1 NC_005264.1 + 29783 0.66 0.811221
Target:  5'- gUCgGCuUUGCgagccagaaacaCGCGCAcCGCCGCGGAa -3'
miRNA:   3'- gAGgUG-AACG------------GCGCGU-GCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 29975 0.66 0.823264
Target:  5'- gUCCGCgucccugGCCGCuggcaacguugauguGUguagaGCGCCGCAGAUg -3'
miRNA:   3'- gAGGUGaa-----CGGCG---------------CG-----UGCGGUGUCUA- -5'
24731 3' -58.1 NC_005264.1 + 31231 0.66 0.802423
Target:  5'- uCUCCGCgcgcGCCcaCGCGCGCCGCu--- -3'
miRNA:   3'- -GAGGUGaa--CGGc-GCGUGCGGUGucua -5'
24731 3' -58.1 NC_005264.1 + 31259 0.67 0.769549
Target:  5'- cCUCCACaccuaggcgccaggUGCCGCGCACa-UGCAGAa -3'
miRNA:   3'- -GAGGUGa-------------ACGGCGCGUGcgGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 31832 0.7 0.596021
Target:  5'- aCUCUGCcgUGCCGCGCGCGgCA-AGAc -3'
miRNA:   3'- -GAGGUGa-ACGGCGCGUGCgGUgUCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.